View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21515_low_15 (Length: 244)
Name: NF21515_low_15
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21515_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 37914703 - 37914928
Alignment:
| Q |
1 |
gagaatccctctcactttctttgacatttcttggttttactgcaaannnnnnnttaaacgcatcttcttctaccactttcctcacccaactcatcacttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914703 |
gagaatccctctcactttctttgacatttcttggttttactgcaaacccccccttaaacgcatcttcttctaccactttcctcacccaactcatcacttc |
37914802 |
T |
|
| Q |
101 |
ctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914803 |
ctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccata |
37914902 |
T |
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| Q |
201 |
acactcctccttacatacgttacctt |
226 |
Q |
| |
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|||||||||||| ||||||||||||| |
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| T |
37914903 |
acactcctcctttcatacgttacctt |
37914928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 37906545 - 37906765
Alignment:
| Q |
6 |
tccctctcactttctttgacatttcttggttttactgcaaannnnnnnttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctcca |
105 |
Q |
| |
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|||||||||| ||||| |||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37906545 |
tccctctcaccttcttcgacatttcatggttttactgtcaacccactgttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctcca |
37906644 |
T |
|
| Q |
106 |
aacaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacact |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37906645 |
aacaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacact |
37906744 |
T |
|
| Q |
206 |
cctccttacatacgttacctt |
226 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
37906745 |
cctcctttcatacgttacctt |
37906765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 57 - 225
Target Start/End: Complemental strand, 37961472 - 37961304
Alignment:
| Q |
57 |
aacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacactt |
156 |
Q |
| |
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|||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||| | |||||| |
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| T |
37961472 |
aacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacactt |
37961373 |
T |
|
| Q |
157 |
ctttcccttcacctccaacctcatcatccctccaaattcccataacactcctccttacatacgttacct |
225 |
Q |
| |
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||| || || |||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
37961372 |
cttccctttttcctctaacctcatcgtccctccaaattcccaaaacaccgatccttacatacgttacct |
37961304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 3782862 - 3782970
Alignment:
| Q |
54 |
ttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaaca |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||| |||||| | ||||| |||| |
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| T |
3782862 |
ttaaacgcatcttcttctaccactttcctcatccaactcatcactttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaaca |
3782961 |
T |
|
| Q |
154 |
cttctttcc |
162 |
Q |
| |
|
||||||||| |
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|
| T |
3782962 |
cttctttcc |
3782970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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