View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21515_low_18 (Length: 230)
Name: NF21515_low_18
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21515_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 31322236 - 31322062
Alignment:
| Q |
1 |
atcaaacaaaaattacaaagatttgatttggacaattcaaacagtaacttataactaaacactcaattgtctcaaaatagtgtattgtagaacaataacg |
100 |
Q |
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| T |
31322236 |
atcaaacaaaaattacaaagatttgatttggacaattcaaacagtaacttataactaaacactcaattgtctcaaaatagtgtattgtagaacaataacg |
31322137 |
T |
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| Q |
101 |
atttgttcaaaactctgctacgctaaagcgcctctgtagacaatacttgacaacattgattccatgtcaaaaacc |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31322136 |
atttgttcaaaactctgctacgctaaagcgcctctgtagacaatacttgacaacattgattccatgtcaaaaacc |
31322062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 24769347 - 24769311
Alignment:
| Q |
75 |
aaatagtgtattgtagaacaataacgatttgttcaaa |
111 |
Q |
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| T |
24769347 |
aaatagtgtattgcagaacaataatgatttgttcaaa |
24769311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 25268856 - 25268807
Alignment:
| Q |
75 |
aaatagtgtattgtagaacaataacgatttgttcaaaactctgctacgcta |
125 |
Q |
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| T |
25268856 |
aaatagtgtatagcagaacaataacgatttgttc-aaattctgctacgcta |
25268807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 37233455 - 37233419
Alignment:
| Q |
75 |
aaatagtgtattgtagaacaataacgatttgttcaaa |
111 |
Q |
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| T |
37233455 |
aaatagtgtatcgtagaacaataacaatttgttcaaa |
37233419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 36547700 - 36547660
Alignment:
| Q |
72 |
tcaaaatagtgtattgtagaacaataacgatttgttcaaaa |
112 |
Q |
| |
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||||||||||| |||| ||||||||||| |||||||||||| |
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| T |
36547700 |
tcaaaatagtgcattgcagaacaataacaatttgttcaaaa |
36547660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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