View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21515_low_19 (Length: 227)
Name: NF21515_low_19
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21515_low_19 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13308933 - 13308708
Alignment:
| Q |
1 |
tgttacattccatatcattcaaaagcagatgtatgtgttatgcattagtattgagtcatatttgactccaaaatatccnnnnnnngtcattcctgcatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13308933 |
tgttacattccatatcattcaaaagcagatgcatgtgttgtgcattagtattgagtcatatttgactccaaaatatccaaaaaa-gtcattcctgcatga |
13308835 |
T |
|
| Q |
101 |
cattaaattactcttaattagtattacataaatcaaatactctaagtatgagaaagtaagaatagttaataaatagtataccattgagtggaattaaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13308834 |
cattaaattactcttaattagtattacataaattaagtactctaagtatgataaagtaagaatagttaataaacagtataccattgagtggaattaaaca |
13308735 |
T |
|
| Q |
201 |
aaaggcccagttgctggtggtgaaaca |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
13308734 |
aaaggcccagttgctggtggtgaaaca |
13308708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14592636 - 14592861
Alignment:
| Q |
1 |
tgttacattccatatcattcaaaagcagatgtatgtgttatgcattagtattgagtcatatttgactccaaaatatccnnnnnnngtcattcctgcatga |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
14592636 |
tgttacatttcatatcattcaaaagcagatgtatgtgttgtgcattagtattgagtcatatttgactccaaaatatc-aaaaaaagtcattcttgcatga |
14592734 |
T |
|
| Q |
101 |
cattaaattactcttaattagtattacataaatcaaatactctaagtatgagaaagtaagaatagttaataaatagtataccattgagtggaattaaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
14592735 |
cattaaattactcttaattagtattacataaatcaaatactctaagtatgataaagtaagaatagttaataaacagtataccatttagtggaattaaaca |
14592834 |
T |
|
| Q |
201 |
aaaggcccagttgctggtggtgaaaca |
227 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
14592835 |
gaaggcctagttgctggtggtgaaaca |
14592861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 13786995 - 13786859
Alignment:
| Q |
1 |
tgttacattccatatcattcaaaagcagatgtatgtgttatgcattagtattgagtcatatttgactccaaaatatccnnnnnnngtcattcctgcatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13786995 |
tgttacattccatatcattcaaaagcatatgcatgtgttgtgcattagtattgagtcatatttgactccaaaatatcc-aaaaaagtcattcctgcatga |
13786897 |
T |
|
| Q |
101 |
cattaaattactcttaattagtattacataaatcaaat |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13786896 |
cattaaattactcttaattagtattacataaataaaat |
13786859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 21281352 - 21281538
Alignment:
| Q |
14 |
atcattcaaaagcagatgtatgtgttatgcattagtattgagtcatatttgactccaaaatatccnnnnnnngtcattcctgcatgacattaaattactc |
113 |
Q |
| |
|
|||||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
21281352 |
atcattcaaaagcaaagtcatgtgttgtacattagtattgagtcatatttgactccaaaatatccaaaaaaagtaattcatgcatgacattaaattactt |
21281451 |
T |
|
| Q |
114 |
ttaattagtattacataaatcaaatactctaagtatgagaaagtaagaatagttaataaatagtataccattgagtggaattaaaca |
200 |
Q |
| |
|
|| ||||||||||||| ||| | |||| |||||||||||||||| |||| |||| ||| ||||| ||||||||| ||||||||| |
|
|
| T |
21281452 |
ttgattagtattacattaattcagtacttcaagtatgagaaagtaaaaataaataatgaattgtatatcattgagtgaaattaaaca |
21281538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University