View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21515_low_2 (Length: 465)
Name: NF21515_low_2
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21515_low_2 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 80 - 465
Target Start/End: Complemental strand, 34483358 - 34482975
Alignment:
| Q |
80 |
atcttttaatgtattgtaaccaaaaataaaagtttaatagccgaaaagcataagttatgccaccagcatattaaaatacatatcgtttattgagataaga |
179 |
Q |
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| T |
34483358 |
atcttttaatgtattgtaaccaaaaataaaagtttaatagccgaaaagcataagttatgccaccagcatattaaaatacatatcgtttattgagataaga |
34483259 |
T |
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| Q |
180 |
aacatcagtatacttgcaaaaataagttaacctctctaattattttacaaaaggaaataattcaatactcaataaaatcatgcatgctatatattatgtt |
279 |
Q |
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| T |
34483258 |
aacatcagtatacttgcaaaaataagttaacctctg--attattttacaaaaggaaataattcaatactcaataaaatcatgcatgctatatattatgtt |
34483161 |
T |
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| Q |
280 |
taagtctgaaatcccttgctaattgatttctacatggaagaaatcgaaaacaattcaatactcaataaaatgatgctatatattttatttaagtctaaaa |
379 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34483160 |
taagtctgaaatctcttgctaattgatttctacattgaagaaatcgaaaacaattcaatactgaataaaatgatgctatatattttatttaagtctaaaa |
34483061 |
T |
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| Q |
380 |
tctcttgctaattgatttttacatggaagaattcgaatttgaaaacaacaattaacgatttgacggtgtttattttatatacaaat |
465 |
Q |
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| T |
34483060 |
tctcttgctaattgatttttacatggaagaatttgaatttgaaaacaacaattaacgatttgacggtgtttattttatatacaaat |
34482975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 34493319 - 34493193
Alignment:
| Q |
168 |
attgagataagaaacatcagtatacttgcaaaaataa-gttaacctctctaattattttacaaaaggaaataattcaatactcaataaaatcatgcatgc |
266 |
Q |
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|||||||||||||| |||||| |||||| | |||||| |||||||||| || |||||||||||| |||| |||||||||||| ||||||| ||| | |
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| T |
34493319 |
attgagataagaaatatcagtctacttgaacaaataaagttaacctct--aactattttacaaaatgaaacaattcaatactctataaaat----catac |
34493226 |
T |
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| Q |
267 |
tatatattatgtttaagtctgaaatcccttgct |
299 |
Q |
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|||||||| ||||||||||| ||||| |||||| |
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| T |
34493225 |
tatatattttgtttaagtctaaaatctcttgct |
34493193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 327 - 388
Target Start/End: Complemental strand, 34493254 - 34493193
Alignment:
| Q |
327 |
aaacaattcaatactcaataaaatgatgctatatattttatttaagtctaaaatctcttgct |
388 |
Q |
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| T |
34493254 |
aaacaattcaatactctataaaatcatactatatattttgtttaagtctaaaatctcttgct |
34493193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 1444577 - 1444524
Alignment:
| Q |
344 |
ataaaatgatgctatatattttatttaagtctaaaatctcttgctaattgattt |
397 |
Q |
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| T |
1444577 |
ataaaatcatactatatattttgctcaagtctacaatctcttgctaattgattt |
1444524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 38728908 - 38728961
Alignment:
| Q |
344 |
ataaaatgatgctatatattttatttaagtctaaaatctcttgctaattgattt |
397 |
Q |
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| T |
38728908 |
ataaaatcatactatatattttgttcaagtctacaatctcttgctaattgattt |
38728961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 33982277 - 33982319
Alignment:
| Q |
355 |
ctatatattttatttaagtctaaaatctcttgctaattgattt |
397 |
Q |
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| T |
33982277 |
ctatatattttgttcaagtctacaatctcttgctaattgattt |
33982319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 24438282 - 24438229
Alignment:
| Q |
344 |
ataaaatgatgctatatattttatttaagtctaaaatctcttgctaattgattt |
397 |
Q |
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||||||| || ||||||||||| | ||||||| |||||||||||||||||||| |
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| T |
24438282 |
ataaaatcatactatatattttgctcaagtctacaatctcttgctaattgattt |
24438229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 12179679 - 12179626
Alignment:
| Q |
344 |
ataaaatgatgctatatattttatttaagtctaaaatctcttgctaattgattt |
397 |
Q |
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| T |
12179679 |
ataaaatcatactatatattttgctcaagtctacaatctcttgctaattgattt |
12179626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 21350987 - 21351040
Alignment:
| Q |
344 |
ataaaatgatgctatatattttatttaagtctaaaatctcttgctaattgattt |
397 |
Q |
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| T |
21350987 |
ataaaatcatactatatattttgctcaagtctacaatctcttgctaattgattt |
21351040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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