View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21515_low_4 (Length: 433)
Name: NF21515_low_4
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21515_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 34816640 - 34816242
Alignment:
| Q |
19 |
acactctagtcattgttaaaccgaaaagaatctagggaagacttctcggagaggatactcgctgacccacttatcatgccagaaaagaatatgtactccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34816640 |
acactctagtcattgttaaaccgaaaagaatctagggaagacttctcggagaggatactcgctgacccacttatcatgccagaaaagaatatgtactccc |
34816541 |
T |
|
| Q |
119 |
accatttcccattttttccgcatcatacccttgaaccaatcctctcccccgacccccattacccacaccacacaagtccttccaccacaatgaagctaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34816540 |
accatttcccattttttccgcatcatacccttgaaccaatcctctcccccaacccccattacccacaccacacaagtccttccaccacaatgaagctaga |
34816441 |
T |
|
| Q |
219 |
ctcaatctgtcaaaattagataaatccgagttagccacaatactaactttgtacttggcatataaggcaccttttgcaatgagaatcacccttgcagtag |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
34816440 |
ctcaatctgtcaaaattagataaatccgagttagccacaataccaactttgtacttggc--atacggcaccttttgcaatgagaatcacccttgcagcag |
34816343 |
T |
|
| Q |
319 |
tactctcattaatgatattgggatagaacccaaaatagaattgatgtgaacgactctaccactgagactaacatatatatcctcaacgatcgcaatttga |
418 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34816342 |
tactctcattaatgatgttgggatagaacccaaaatagaattgatgtgaacaactctaccactgagactaacatatgtatcctcaacgatcgcaatttga |
34816243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University