View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21515_low_6 (Length: 365)

Name: NF21515_low_6
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21515_low_6
NF21515_low_6
[»] chr5 (7 HSPs)
chr5 (11-349)||(5663596-5663934)
chr5 (195-345)||(5046365-5046515)
chr5 (195-344)||(5047137-5047286)
chr5 (195-344)||(5047908-5048057)
chr5 (47-243)||(5664702-5664895)
chr5 (95-148)||(5046572-5046625)
chr5 (95-148)||(5047343-5047396)
[»] chr4 (7 HSPs)
chr4 (47-345)||(24853263-24853562)
chr4 (195-345)||(51246539-51246689)
chr4 (195-343)||(17525522-17525670)
chr4 (195-335)||(28787887-28788027)
chr4 (52-342)||(28786930-28787223)
chr4 (53-288)||(24856211-24856448)
chr4 (98-148)||(51246738-51246788)
[»] scaffold0406 (1 HSPs)
scaffold0406 (84-344)||(6198-6460)
[»] chr7 (1 HSPs)
chr7 (195-345)||(22622406-22622556)
[»] chr1 (4 HSPs)
chr1 (217-345)||(22055518-22055646)
chr1 (221-345)||(22056597-22056721)
chr1 (204-296)||(29371869-29371961)
chr1 (45-149)||(22056427-22056530)
[»] chr8 (1 HSPs)
chr8 (184-345)||(1275221-1275379)
[»] chr3 (3 HSPs)
chr3 (195-345)||(12739259-12739409)
chr3 (195-345)||(12738108-12738258)
chr3 (218-345)||(15022976-15023103)
[»] chr2 (1 HSPs)
chr2 (195-345)||(20978872-20979023)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 5663596 - 5663934
Alignment:
Q  11 cataggagtggcacccttcataacttatgagtatattgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagaca 110  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  5663596 cataggagtggcacccttcataacttacgagtatattgttagaaaatatatattgtgggtgctagtggtacaatggttagtagcattggacaagaagaca 5663695  T
Q  111 cacattggtaaatagctcattgtagaaggagagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgcaccca 210  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663696 cacattgataaatagctcattgtagaaggagagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgcaccca 5663795  T
Q  211 tataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctagg 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663796 tataattctatttataagtgattgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctagg 5663895  T
Q  311 ctataatttaatttagacattaatagaacaatctaaaac 349  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  5663896 ctacaatttaatttagacattaatagaacaatctaaaac 5663934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 195 - 345
Target Start/End: Complemental strand, 5046515 - 5046365
Alignment:
Q  195 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 294  Q
    |||||||| |||| ||||||| |||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||| || | ||||||  |||||||    
T  5046515 aatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctacacaagattat 5046416  T
Q  295 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta 345  Q
    |||||||||||||||||| ||| ||||  |||||||||||| |||||||||    
T  5046415 tatagatgtttctaggctttaacttaacctagacattaataaaacaatcta 5046365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 344
Target Start/End: Complemental strand, 5047286 - 5047137
Alignment:
Q  195 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 294  Q
    |||||||| |||| ||||||| | |||||||| ||||||| |||||||||||||||||||| | ||||||||||||||| || | |||| |  |||||||    
T  5047286 aatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctagacaagattat 5047187  T
Q  295 tatagatgtttctaggctataatttaatttagacattaatagaacaatct 344  Q
    |||||||| ||| ||||| ||| ||||  |||||||||||||||||||||    
T  5047186 tatagatggttcaaggctttaacttaacctagacattaatagaacaatct 5047137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 344
Target Start/End: Complemental strand, 5048057 - 5047908
Alignment:
Q  195 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 294  Q
    |||||||| |||| ||||||| | |||||||| ||||||| |||||||| ||||||||||| | ||||||||||||||| || | ||||||  |||||||    
T  5048057 aatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatctaggcctttgtttgccttatctacacaagattat 5047958  T
Q  295 tatagatgtttctaggctataatttaatttagacattaatagaacaatct 344  Q
    |||||||| ||| ||||| ||| ||||  |||||||||||||||||||||    
T  5047957 tatagatggttcaaggctttaacttaacctagacattaatagaacaatct 5047908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 243
Target Start/End: Original strand, 5664702 - 5664895
Alignment:
Q  47 tgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaat 146  Q
    |||||||||||||||| ||||| ||| ||| ||| | ||||   | ||||||||||||||| ||||||||||||| ||  | ||||||| ||||||||||    
T  5664702 tgttagaaaatatatagtgtggaagcaagttgtagagtggtatgtggcattggacaagaaggcacacattggtaattaatttattgtaggaggagagaat 5664801  T
Q  147 atagtatatggaagcccttaata-tattgtaattgtatttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgttt 243  Q
    ||  || | ||||||||| |||| |||||| |||||||||||| | || |||||||| |||||||||||| ||    |||| ||||||||||||||||    
T  5664802 atgatacagggaagccctcaatattattgtcattgtatttaaaagcttgaatacaattgcacccatataagtc----tataggtgcttgaagatgttt 5664895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 5046625 - 5046572
Alignment:
Q  95 attggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 148  Q
    ||||||||| | ||||| ||||||||| ||||||||||||| ||||||||||||    
T  5046625 attggacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatat 5046572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 5047396 - 5047343
Alignment:
Q  95 attggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 148  Q
    ||||||||| | ||||| ||||||||| ||||||||||||| ||||||||||||    
T  5047396 attggacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatat 5047343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 47 - 345
Target Start/End: Complemental strand, 24853562 - 24853263
Alignment:
Q  47 tgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaat 146  Q
    |||||||||| ||||| ||| ||||||||||||  | || ||| ||||||||||||||| |||||| |||||||| ||||||||||||| |||| |||||    
T  24853562 tgttagaaaa-atatagtgtaggagctagtggtggagtgtttagtagcattggacaagaggacacatattggtaattagctcattgtaggaggaaagaat 24853464  T
Q  147 atagtatatggaagcccttaatat-attgtaattgtat-ttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttc 244  Q
    ||  |||   |||||| | ||||| ||||  |||| || ||||| | || |||||||| ||| ||| |||| |||||||||| ||| | ||||||||||     
T  24853463 atgatatgatgaagccttcaatattattgacattgcatcttaaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttt 24853364  T
Q  245 taaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataatttaatttagacattaatagaacaatct 344  Q
    || |||||||| | | ||||||||||||| || |||||||||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||    
T  24853363 tagaactagaataatttaggcctttgtttgccttttctacattagattattatagatgtttcttggctataacttaatttatatattaatagaacaatct 24853264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 195 - 345
Target Start/End: Complemental strand, 51246689 - 51246539
Alignment:
Q  195 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 294  Q
    |||||||| |||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| | ||||||||||||||| || | ||||||  |||||||    
T  51246689 aatacaattgcacccatataagtctacttataggtgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctacacaagattat 51246590  T
Q  295 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta 345  Q
    |||||||||||||||||| ||| ||||  |||||||||||||| |||||||    
T  51246589 tatagatgtttctaggctttaacttaacctagacattaatagagcaatcta 51246539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 195 - 343
Target Start/End: Original strand, 17525522 - 17525670
Alignment:
Q  195 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 294  Q
    ||||||||  ||| ||||||| |||||||||||| ||||| ||||||||||| |||||||| | ||||||||||||||| || | ||||||  |||||||    
T  17525522 aatacaatttcacacatataagtctatttataagcgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctacacaagattat 17525621  T
Q  295 tatagatgtttctaggctataatttaatttagacattaatagaacaatc 343  Q
    |||||||||||||||||| ||| ||||  ||||||||||||||| ||||    
T  17525622 tatagatgtttctaggctttaacttaacctagacattaatagaataatc 17525670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 195 - 335
Target Start/End: Complemental strand, 28788027 - 28787887
Alignment:
Q  195 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 294  Q
    |||||||| |||||||||||  |||||||||| ||| ||||||||||||||| |||||||| | |||||||||||||||||| ||| |||||||||| ||    
T  28788027 aatacaattgcacccatatatgtctatttataggtgtttgaagatgtttctagaactagaataatctaggcctttgttttccttttgtacattagataat 28787928  T
Q  295 tatagatgtttctaggctataatttaatttagacattaata 335  Q
    ||||||| ||||||||||| || |||||  ||||| |||||    
T  28787927 tatagatatttctaggctacaacttaatcgagacaataata 28787887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 52 - 342
Target Start/End: Complemental strand, 28787223 - 28786930
Alignment:
Q  52 gaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatatagt 151  Q
    ||||| ||||| ||| ||||||| ||||| | |||||| |||||||| |||||| |||||||||| |||| || |||||| ||| |||||| |||||  |    
T  28787223 gaaaaaatatagtgtaggagctaatggtagagtggttagtagcattgaacaagaggacacacattagtaattacctcattataggaggagataatatgat 28787124  T
Q  152 ata-tgg--aagcccttaatatattgta-attgtatttaaatgt-ttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttcta 246  Q
    ||  |||  ||||| | |||||  | || |||| || |||| |  || |||||||| ||||| |||||  |||||||||| |||||||||||||||||||    
T  28787123 atggtggtgaagccttcaatattatatacattgcatctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttcta 28787024  T
Q  247 aaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataatttaatttagacattaatagaacaat 342  Q
     |||||  | | | ||||||||||| |||| ||||||||| |||| ||||||||||||||||||||| || |||||  ||||||||||| ||||||    
T  28787023 gaacta--ataatttaggcctttgtattccttttctacataagataattatagatgtttctaggctacaacttaatcgagacattaatataacaat 28786930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 288
Target Start/End: Complemental strand, 24856448 - 24856211
Alignment:
Q  53 aaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatatagta 152  Q
    |||||||||||  |  |||||||||||  | || ||| ||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||  ||    
T  24856448 aaaatatatatcatatgagctagtggtggagtgtttagtagcattggacaagatgacacatattggtaattagctcattgtaggaggagagaatatgata 24856349  T
Q  153 tatggaagcccttaata-tattgtaattgtat-ttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaac 250  Q
    |   ||| |  | |||| |||||  |||| || ||||| | |  |||||||| ||| ||  |||| |||||||||| ||| | ||| ||||||||| |||    
T  24856348 tggtgaaactttcaatattattgacattgcatcttaaaggctggaatacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaac 24856249  T
Q  251 tagaagagtctaggcctttgttttccgtttctacatta 288  Q
    ||||| | ||||||||||||||| || || ||||||||    
T  24856248 tagaataatctaggcctttgtttgcctttcctacatta 24856211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 51246788 - 51246738
Alignment:
Q  98 ggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat 148  Q
    |||||||| |||||||||| | || ||||||||||||| ||||||||||||    
T  51246788 ggacaagaggacacacattaggaattagctcattgtaggaggagagaatat 51246738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 84 - 344
Target Start/End: Complemental strand, 6460 - 6198
Alignment:
Q  84 tggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatatagtatatggaagcccttaatat-attgtaattgta 182  Q
    |||||| ||||||||||||||| |||||||||| | || ||||||||| ||| |||||| |||||  | |   |||||| | ||||| ||||  |||| |    
T  6460 tggttagtagcattggacaagatgacacacattaggaattagctcattataggaggagataatatgattttgtgaagccttcaatattattgacattgca 6361  T
Q  183 ttt-aaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttc 281  Q
    | | ||| | || ||||||||  ||||||||||| |||||||||| |||||||||| |||||||| |||||||| | ||||||||||||||| || | ||    
T  6360 tctcaaaggcttgaatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctaggcctttgtttgccttatc 6261  T
Q  282 tacattagattattatagatgtttctaggctataatttaatttagacattaatagaacaatct 344  Q
    | ||  ||||||||||||||||||||||||| ||| ||||  |||||||||||||||||||||    
T  6260 tgcacaagattattatagatgtttctaggctttaacttaacctagacattaatagaacaatct 6198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 195 - 345
Target Start/End: Original strand, 22622406 - 22622556
Alignment:
Q  195 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 294  Q
    |||||||| ||||||||||||  |||||||||||||| |||||||||||||| || ||||| | |||||| |||||||| || ||||||||||||| |||    
T  22622406 aatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctaggtctttgtttgccttttctacattagaatat 22622505  T
Q  295 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta 345  Q
    | ||||||||| ||||||| |||||||| |||| |||||||||||||||||    
T  22622506 tgtagatgtttttaggctacaatttaatctagatattaatagaacaatcta 22622556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 217 - 345
Target Start/End: Original strand, 22055518 - 22055646
Alignment:
Q  217 tctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataa 316  Q
    |||||||||||||||||||||||| ||||| ||||| || | |||||| |||||||| || ||| |||||||||||||||||||||||||||||||| ||    
T  22055518 tctatttataagtgcttgaagatgattctagaactaaaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaa 22055617  T
Q  317 tttaatttagacattaatagaacaatcta 345  Q
    |||||| ||||||||||| ||||||||||    
T  22055618 tttaatctagacattaattgaacaatcta 22055646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 221 - 345
Target Start/End: Original strand, 22056597 - 22056721
Alignment:
Q  221 tttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataattta 320  Q
    |||||| |||||||||||| |||||| |||||||| | ||||||| ||||||| || ||||||||||||||||| |||||||||| ||||||| || |||    
T  22056597 tttataggtgcttgaagatatttctagaactagaataatctaggcatttgtttgccttttctacattagattatcatagatgtttttaggctacaaatta 22056696  T
Q  321 atttagacattaatagaacaatcta 345  Q
    || |||||||||| |||||||||||    
T  22056697 atctagacattaacagaacaatcta 22056721  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 296
Target Start/End: Complemental strand, 29371961 - 29371869
Alignment:
Q  204 gcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattatta 296  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| ||| ||| | ||||| | ||||||| || |||| |||||| |||||||    
T  29371961 gcacccatataaatctatttataagtgcttgaagatgtttataatacttgaataatctagacttttgtttgccttttccacattacattatta 29371869  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 22056427 - 22056530
Alignment:
Q  45 attgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagaga 144  Q
    |||||| ||||| ||||| ||| ||||| | ||||| | | |||| ||||||||||||||| |||||| ||| |||| || |||||||||  ||||||||    
T  22056427 attgttggaaaa-atatagtgtaggagccaatggtagatttgttagtagcattggacaagaggacacatatttgtaattaactcattgtatgaggagaga 22056525  T
Q  145 atata 149  Q
    |||||    
T  22056526 atata 22056530  T

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Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 184 - 345
Target Start/End: Original strand, 1275221 - 1275379
Alignment:
Q  184 ttaaatgtttaaatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttcta 283  Q
    ||||| |||| |||||||| |||||||||||  | || ||||| |||||||||| |||||||| |||||||    ||||||||||||||| || ||||||    
T  1275221 ttaaacgtttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactagat---tctaggcctttgtttgccatttcta 1275317  T
Q  284 cattagattattatagatgtttctaggctataatttaatttagacattaatagaacaatcta 345  Q
    ||||||||||||||||||||||||| ||||||| |||||||| ||||||||| || ||||||    
T  1275318 cattagattattatagatgtttctaagctataacttaatttatacattaataaaataatcta 1275379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 195 - 345
Target Start/End: Complemental strand, 12739409 - 12739259
Alignment:
Q  195 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 294  Q
    |||||||| ||| ||| |||||||||||||||  |||||| ||||||||||| ||||| || | ||||||| ||||||| || ||||||||  |||||||    
T  12739409 aatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatctaggcttttgtttgccttttctacacaagattat 12739310  T
Q  295 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta 345  Q
    |||||||||||||||||| ||| ||||  |||| |||||||||||||||||    
T  12739309 tatagatgtttctaggctgtaacttaacctagatattaatagaacaatcta 12739259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 195 - 345
Target Start/End: Complemental strand, 12738258 - 12738108
Alignment:
Q  195 aatacaatcgcacccatataattctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattat 294  Q
    |||||||| ||||||| |||| | |||||||| ||||||| ||||||||||| ||||| ||   ||||||| ||||||| || ||||||||  |||| ||    
T  12738258 aatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaactaaaattatctaggcttttgtttgccttttctacacaagataat 12738159  T
Q  295 tatagatgtttctaggctataatttaatttagacattaatagaacaatcta 345  Q
    ||| |||||||||||||| ||  ||||| ||||||||||||||||||||||    
T  12738158 tattgatgtttctaggctttaccttaatctagacattaatagaacaatcta 12738108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 15023103 - 15022976
Alignment:
Q  218 ctatttataagtgcttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctataat 317  Q
    ||||||||| ||||||| ||||||||||| ||||| || | ||||||| ||||||| || | ||||||  |||||||||||||||||| ||| || |||     
T  15023103 ctatttataggtgcttgtagatgtttctagaactaaaataatctaggcatttgtttgccttatctacacaagattattatagatgtttttagactttaac 15023004  T
Q  318 ttaatttagacattaatagaacaatcta 345  Q
    | ||  || |||||||||||||||||||    
T  15023003 tgaacctaaacattaatagaacaatcta 15022976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 345
Target Start/End: Original strand, 20978872 - 20979023
Alignment:
Q  195 aatacaatcgcacccatataattctatttataagtgctt-gaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagatta 293  Q
    |||| ||| |||||||||||| | |||||||| || ||| | ||||||||||| |||||||| | ||||  ||||||||| || | ||||||  | ||||    
T  20978872 aatataatggcacccatataagtttatttataggtactttgtagatgtttctagaactagaataatctatacctttgtttgccttatctacacaatatta 20978971  T
Q  294 ttatagatgtttctaggctataatttaatttagacattaatagaacaatcta 345  Q
    ||||||||||||||||||| ||| ||||  || |||| ||||||||||||||    
T  20978972 ttatagatgtttctaggctttaacttaacctaaacatgaatagaacaatcta 20979023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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