View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21515_low_7 (Length: 319)

Name: NF21515_low_7
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21515_low_7
NF21515_low_7
[»] chr7 (1 HSPs)
chr7 (1-305)||(45650064-45650359)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 45650064 - 45650359
Alignment:
Q  1 aatgcaagtaacatgcttattttcctattttaaggtttgttgaagttattaaaagaagaagaaaagtcgttgggatgatccggaaggaacccaaacagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45650064 aatgcaagtaacatgcttattttcctattttaaggtttgttgaagttattaaaagaagaagaaaagtcgttgggatgatccggaaggaacccaaacagaa 45650163  T
Q  101 gggcactggtggtttggtttgtgccttgttcttgaaatttgagatttgactttcatttttatccnnnnnnnnnnnncgaatgttttgacttgcatctcca 200  Q
    ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||    
T  45650164 gggcac---tggtttggtttgtgccttgttcttgaaatttgagatttgactttcatttttatccaaaaataaaaaacgaatgttttgacttgcatctcca 45650260  T
Q  201 gcaatgcacatcttgcctgacccacgccgttgtgaatatggatggatatactctgattaatgtatatctatagaagtcccaacttgcatccaaatcatag 300  Q
    |||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  45650261 gcaatgcacatcttgcctgacccacgccgttgtgaat----atggatatactttgattaatg--tatctatagaagtcccaacttgcatccaaatcatag 45650354  T

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