View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21515_low_8 (Length: 306)

Name: NF21515_low_8
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21515_low_8
NF21515_low_8
[»] chr6 (2 HSPs)
chr6 (1-281)||(14592964-14593245)
chr6 (1-281)||(13308326-13308605)
[»] chr3 (1 HSPs)
chr3 (53-261)||(22598549-22598757)
[»] chr5 (2 HSPs)
chr5 (58-261)||(6837692-6837895)
chr5 (164-228)||(34915885-34915949)
[»] chr7 (4 HSPs)
chr7 (60-261)||(22347989-22348190)
chr7 (114-281)||(21281790-21281957)
chr7 (164-228)||(17859863-17859927)
chr7 (22-86)||(21281730-21281794)
[»] chr1 (1 HSPs)
chr1 (53-261)||(16000914-16001122)
[»] chr4 (1 HSPs)
chr4 (164-228)||(4968394-4968458)
[»] chr8 (2 HSPs)
chr8 (148-261)||(306589-306702)
chr8 (53-114)||(306510-306571)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 14592964 - 14593245
Alignment:
Q  1 cacaataaattcatagacaa-ctactaagttacctccaacgagattctctaaaagctgatactcttcactcaaattaagatctttgaagtcaatgaaaaa 99  Q
    |||||||||||||||||||  |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14592964 cacaataaattcatagacacgctactaagttaccttcaacgacattctctaaaagctgatactcttcactcaaattaagatctttgaagtcaatgaaaaa 14593063  T
Q  100 aggttttaaccaattttgacaacatatcaaagctgcaaccattgtcggactcaaggagctcctgtatgtgtctaaaactcttcctccagtgctaaatgcg 199  Q
    ||||||||  |||||||||||||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  14593064 aggttttagtcaattttgacaacatatcaaagcttcagccattgtcggactcaaggaactcctatatgtgtctaaaactcttcctccagtgctaaatgcg 14593163  T
Q  200 ctttcagaagcaacagttgacaccggtgtggccaaacaatctctaaccattgctgccaaaactgaatatcatacttcatttt 281  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  14593164 ctttcagaagcaacagttgacaccgatgtggccaaacaatctgtaaccattgctgccaaaactggatatcatacttcatttt 14593245  T

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Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 13308605 - 13308326
Alignment:
Q  1 cacaataaattcatagaca-actactaagttacctccaacgagattctctaaaagctgatactcttcactcaaattaagatctttgaagtcaatgaaaaa 99  Q
    ||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |    
T  13308605 cacaataaattcatagacacactaataaattacctccaacgacattctctaaagcctgatactcttcactcaaattaagatctttgaagtcaatgaaaga 13308506  T
Q  100 aggttttaaccaattttgacaacatatcaaagctgcaaccattgtcggactcaaggagctcctgtatgtgtctaaaactcttcctccagtgctaaatgcg 199  Q
    |||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  13308505 aggttttagccaattttgacaacatatcaaagcttcagccattgtcggattcaaggagctcctatatgtgtctaaaactcttcctccagtgctaaatgtg 13308406  T
Q  200 ctttcagaagcaacagttgacaccggtgtggccaaacaatctctaaccattgctgccaaaactgaatatcatacttcatttt 281  Q
    ||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  13308405 ctttcagaagcaacagttgacacc--caccgccaaacaatctctaaccattgctgccaaaactggatatcagacttcatttt 13308326  T

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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 53 - 261
Target Start/End: Complemental strand, 22598757 - 22598549
Alignment:
Q  53 agctgatactcttcactcaaattaagatctttgaagtcaatgaaaaaaggttttaaccaattttgacaacatatcaaagctgcaaccattgtcggactca 152  Q
    |||| |||||||||||||||||| |||||||||||||| | |||| | ||||| | |||||| |||  ||| ||||||||| |  |||||  ||||||||    
T  22598757 agctcatactcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccggactca 22598658  T
Q  153 aggagctcctgtatgtgtctaaaactcttcctccagtgctaaatgcgctttcagaagcaacagttgacaccggtgtggccaaacaatctctaaccattgc 252  Q
    | |||||||| |||||||||||||  |||||||| |||||||||||||| || |||||||| | ||| || |||||||||||   ||||||||||||||     
T  22598657 atgagctcctatatgtgtctaaaatccttcctccggtgctaaatgcgctctccgaagcaactgatgatactggtgtggccaacacatctctaaccattgt 22598558  T
Q  253 tgccaaaac 261  Q
    |||||||||    
T  22598557 tgccaaaac 22598549  T

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Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 58 - 261
Target Start/End: Original strand, 6837692 - 6837895
Alignment:
Q  58 atactcttcactcaaattaagatctttgaagtcaatgaaaaaaggttttaaccaattttgacaacatatcaaagctgcaaccattgtcggactcaaggag 157  Q
    |||||||||||||||||| |||||||||||||| |  ||| | ||||| | |||||| |||  ||| ||||||||| |  |||||  ||||||||| |||    
T  6837692 atactcttcactcaaatttagatctttgaagtcgacaaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccggactcaatgag 6837791  T
Q  158 ctcctgtatgtgtctaaaactcttcctccagtgctaaatgcgctttcagaagcaacagttgacaccggtgtggccaaacaatctctaaccattgctgcca 257  Q
    ||||| |||||||||||||  |||||||| |||||||||||||| || |||||||| | ||| || |||||||||||   |||||||||||||| |||||    
T  6837792 ctcctatatgtgtctaaaatccttcctccggtgctaaatgcgctctccgaagcaactgatgatactggtgtggccaacacatctctaaccattgttgcca 6837891  T
Q  258 aaac 261  Q
    ||||    
T  6837892 aaac 6837895  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 34915949 - 34915885
Alignment:
Q  164 tatgtgtctaaaactcttcctccagtgctaaatgcgctttcagaagcaacagttgacaccggtgt 228  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||| |||||||| || |||||    
T  34915949 tatgtatctaaaactcttcctccagtgctaaaggcactttcagaagccacagttgaaactggtgt 34915885  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 60 - 261
Target Start/End: Complemental strand, 22348190 - 22347989
Alignment:
Q  60 actcttcactcaaattaagatctttgaagtcaatgaaaaaaggttttaaccaattttgacaacatatcaaagctgcaaccattgtcggactcaaggagct 159  Q
    |||||||||||||||| |||||||||||||| | |||| | ||||| | ||||||||||  ||| ||||||||| |  |||||  ||||||||| |||||    
T  22348190 actcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattttgagtacaaatcaaagcttccgccatttccggactcaatgagct 22348091  T
Q  160 cctgtatgtgtctaaaactcttcctccagtgctaaatgcgct-ttcagaagcaacagttgacaccggtgtggccaaacaatctctaaccattgctgccaa 258  Q
     || |||||||||||||  ||||| ||||||||||||||||| |||| ||||||| | ||| || |||||||||||   |||||||||||||| ||||||    
T  22348090 tctatatgtgtctaaaatccttcccccagtgctaaatgcgctcttca-aagcaactgatgatactggtgtggccaacacatctctaaccattgttgccaa 22347992  T
Q  259 aac 261  Q
    |||    
T  22347991 aac 22347989  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 281
Target Start/End: Original strand, 21281790 - 21281957
Alignment:
Q  114 tttgacaacatatcaaagctgcaaccattgtcggactcaaggagctcctgtatgtgtctaaaactcttcctccagtgctaaatgcgctttcagaagcaac 213  Q
    |||||||||||||||||||| || | ||  |   |||| |||| ||| | || |||| |||||| |||| |||  ||||||||||||||| |  |||||     
T  21281790 tttgacaacatatcaaagcttcatcaatatttaaactctaggaactcatataagtgtttaaaacccttcttcctatgctaaatgcgcttttactagcaag 21281889  T
Q  214 agttgacaccggtgtggccaaacaatctctaaccattgctgccaaaactgaatatcatacttcatttt 281  Q
     |||||| |  |||||| |||||||||||||||||||  ||||||||||||||| || ||||||||||    
T  21281890 tgttgacgcatgtgtggtcaaacaatctctaaccattattgccaaaactgaataacaaacttcatttt 21281957  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 17859863 - 17859927
Alignment:
Q  164 tatgtgtctaaaactcttcctccagtgctaaatgcgctttcagaagcaacagttgacaccggtgt 228  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||| |||||||| || |||||    
T  17859863 tatgtatctaaaactcttcctccagtgctaaaggcactttcagaagccacagttgaaactggtgt 17859927  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 21281730 - 21281794
Alignment:
Q  22 tactaagttacctccaacgagattctctaaaagctgatactcttcactcaaattaagatctttga 86  Q
    |||||| ||||||  ||||| ||||||||| |  |||||||||||||||||||||| | ||||||    
T  21281730 tactaaattacctttaacgacattctctaacaattgatactcttcactcaaattaatagctttga 21281794  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 261
Target Start/End: Complemental strand, 16001122 - 16000914
Alignment:
Q  53 agctgatactcttcactcaaattaagatctttgaagtcaatgaaaaaaggttttaaccaattttgacaacatatcaaagctgcaaccattgtcggactca 152  Q
    |||| |||||||||||||||||| |||||||||||||  | |||| | ||||| | |||||| |||  ||| ||||||||| |  |||||  | ||||||    
T  16001122 agctcatactcttcactcaaatttagatctttgaagttgacgaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccagactca 16001023  T
Q  153 aggagctcctgtatgtgtctaaaactcttcctccagtgctaaatgcgctttcagaagcaacagttgacaccggtgtggccaaacaatctctaaccattgc 252  Q
    | ||||| || |||||||||||||  ||||| |  |||||||||||||| || |||||||| | ||| || |||||||||||   ||||||||||||||     
T  16001022 atgagcttctatatgtgtctaaaatccttccccgggtgctaaatgcgctctccgaagcaactgatgatacaggtgtggccaacacatctctaaccattgt 16000923  T
Q  253 tgccaaaac 261  Q
    |||||||||    
T  16000922 tgccaaaac 16000914  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 4968394 - 4968458
Alignment:
Q  164 tatgtgtctaaaactcttcctccagtgctaaatgcgctttcagaagcaacagttgacaccggtgt 228  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||| |||||||| || |||||    
T  4968394 tatgtatctaaaactcttcctccagtgctaaaggcactttcagaagccacagttgaaactggtgt 4968458  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 306589 - 306702
Alignment:
Q  148 actcaaggagctcctgtatgtgtctaaaactcttcctccagtgctaaatgcgctttcagaagcaacagttgacaccggtgtggccaaacaatctctaacc 247  Q
    |||||| | |||||| |||| ||||||||  ||||| || |||||||||||||| || |||| ||| | ||| || |||||||||||   ||||||||||    
T  306589 actcaatgggctcctatatgggtctaaaatccttcccccggtgctaaatgcgctctccgaagaaactgatgatactggtgtggccaagacatctctaacc 306688  T
Q  248 attgctgccaaaac 261  Q
    |||| |||||||||    
T  306689 attgttgccaaaac 306702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 306510 - 306571
Alignment:
Q  53 agctgatactcttcactcaaattaagatctttgaagtcaatgaaaaaaggttttaaccaatt 114  Q
    |||| ||||| |||||||||||| |||||||||||||| | |||| | ||||| ||||||||    
T  306510 agctcatacttttcactcaaatttagatctttgaagtcgacgaaagatggtttcaaccaatt 306571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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