View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21515_low_9 (Length: 300)
Name: NF21515_low_9
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21515_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 49538047 - 49538322
Alignment:
| Q |
7 |
atcccgtcactttaaaaaagttttacatcgttaacaaattacaatcaatcatatatgtgattttagaagtagttattattgaagtcgaacgttt-gacga |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49538047 |
atcccgtcactttaaaaaagttttacatcgttaacaaattacaatcaatcatatatgtgattttagaagtagttattattgaagtcgaacgttttgacga |
49538146 |
T |
|
| Q |
106 |
taatgattaattgatggtgtagaaaatcatcactcttatgtatataaattaaatccttatttttcattcagtgttttgtcagatacttttttaataaaaa |
205 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49538147 |
taatgattaattgatggtgtagaaaatcattactcttatgtatataaattaaatccttatttttcattcagtgttttgtcagatacttttttaataaaaa |
49538246 |
T |
|
| Q |
206 |
caatcatagtcatattaaatgaattttgtaagttgtcttgagcaaaaacaaacctaaaaatgattgatacaaacta |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
49538247 |
caatcatagtcatattaaatgaattttgtaagttgtctttagcaaaaacaaacataaaaatgattgatacaaacta |
49538322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 974542 - 974481
Alignment:
| Q |
21 |
aaaaagttttacatcgttaacaaattacaatcaatcatatatgtgattttagaagtagttat |
82 |
Q |
| |
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||||||||||||| | |||||| ||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
974542 |
aaaaagttttacactctgaacaaagtacaatcaatcatatgtgtgatttttgaagtagttat |
974481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 24547696 - 24547767
Alignment:
| Q |
21 |
aaaaagttttacatcgttaacaaattacaatcaatcatatatgtgattttagaagtagttattattgaagtc |
92 |
Q |
| |
|
||||||||||||| || || |||| |||| ||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
24547696 |
aaaaagttttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgattgaagtc |
24547767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 8460677 - 8460728
Alignment:
| Q |
19 |
taaaaaagttttacatcgttaacaaattacaatcaatcatatatgtgatttt |
70 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||| |||||||||||||| |
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|
| T |
8460677 |
taaaaaagttttacattatcaacaaattataatcaattatatatgtgatttt |
8460728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 281747 - 281779
Alignment:
| Q |
42 |
aaattacaatcaatcatatatgtgattttagaa |
74 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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|
| T |
281747 |
aaatcacaatcaatcatatatgtgattttagaa |
281779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 30011738 - 30011791
Alignment:
| Q |
39 |
aacaaattacaatcaatcatatatgtgattttagaagtagttattattgaagtc |
92 |
Q |
| |
|
||||||| | |||||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
30011738 |
aacaaatcaaaatcaatcatatgtgtgattttagaagtagttatgattgaagtc |
30011791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 8172599 - 8172556
Alignment:
| Q |
53 |
aatcatatatgtgattttagaagtagttattattgaagtcgaac |
96 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||| ||||||| |
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|
| T |
8172599 |
aatcatatgtgtgattttagaagtagttattgttgaggtcgaac |
8172556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 8173166 - 8173209
Alignment:
| Q |
53 |
aatcatatatgtgattttagaagtagttattattgaagtcgaac |
96 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| ||||||| |
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|
| T |
8173166 |
aatcatatgtgtgattttagaagtagttattgttgaggtcgaac |
8173209 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 8173487 - 8173543
Alignment:
| Q |
36 |
gttaacaaattacaatcaatcatatatgtgattttagaagtagttattattgaagtc |
92 |
Q |
| |
|
||||| |||| || ||||||||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
8173487 |
gttaataaatcactatcaatcatatgtgtgatattagaagtagttatggttgaagtc |
8173543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 43059527 - 43059475
Alignment:
| Q |
40 |
acaaattacaatcaatcatatatgtgattttagaagtagttattattgaagtc |
92 |
Q |
| |
|
|||||| |||| || ||||| |||||| ||||||||||||||||||| ||||| |
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| T |
43059527 |
acaaatcacaaccagtcatacatgtgactttagaagtagttattattaaagtc |
43059475 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 10231827 - 10231888
Alignment:
| Q |
21 |
aaaaagttttacatcgttaacaaattacaatcaatcatatatgtgattttagaagtagttat |
82 |
Q |
| |
|
||||||||||||| || ||| ||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
10231827 |
aaaaagttttacactgtccacatattacaatcaatcatatgtgtgattttagaaatagttat |
10231888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 16230757 - 16230810
Alignment:
| Q |
39 |
aacaaattacaatcaatcatatatgtgattttagaagtagttattattgaagtc |
92 |
Q |
| |
|
||||||| |||| ||||||||| | ||||||||||||||||||| ||| ||||| |
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|
| T |
16230757 |
aacaaatcacaaccaatcatatgtttgattttagaagtagttatgattaaagtc |
16230810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 35035661 - 35035600
Alignment:
| Q |
21 |
aaaaagttttacatcgttaacaaattacaatcaatcatatatgtgattttagaagtagttat |
82 |
Q |
| |
|
||||| |||||||| || | |||| |||| ||||||||| ||||||||||||||||||||| |
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|
| T |
35035661 |
aaaaaattttacattgtcagtaaatcacaaccaatcatatgtgtgattttagaagtagttat |
35035600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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