View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21516_high_20 (Length: 238)
Name: NF21516_high_20
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 13291687 - 13291476
Alignment:
| Q |
10 |
tcattaatcaaatatagaaccggaaaaagttaaaataacgacataaattagatatgnnnnnnntgtcaccaaatatttcacctttaacacttggccacaa |
109 |
Q |
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| T |
13291687 |
tcattaatcaaatatagaactggaaat-gttaaaataacgacataaattagatatgaaaaaaatgtcaccaaatatttcacctttaacacttggccacaa |
13291589 |
T |
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| Q |
110 |
aattagagacgcattatgtccttttccgtctcaaattgtcgagttaattcaattttagtgatgtttgctagcttccatgttgtgcaagtaattgtttatt |
209 |
Q |
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| T |
13291588 |
aattagagacgcattatgtccttttccgtctcaaattgtcgagttaattcaattttagtgatgtttgctagcttccatgttgtgcaagtaattgtttatt |
13291489 |
T |
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| Q |
210 |
agggtttaaaatt |
222 |
Q |
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| T |
13291488 |
agggtttaaaatt |
13291476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13291876 - 13291812
Alignment:
| Q |
1 |
taatcaatctcattaatcaaatatagaaccggaaaaagttaaaataacgacataaattagatatg |
65 |
Q |
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| T |
13291876 |
taatcaatctcattaatcaaatatagaaccggaaaaagttaaaataacaacataaattagatatg |
13291812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13291780 - 13291718
Alignment:
| Q |
1 |
taatcaatctcattaatcaaatatagaaccggaaaaagttaaaataacgacataaattagatatg |
65 |
Q |
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| T |
13291780 |
taatcaatctcattaatcaaatatagaaccggaaaaagttaaaata--gacataaattaaatatg |
13291718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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