View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21516_high_21 (Length: 236)
Name: NF21516_high_21
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34347850 - 34347631
Alignment:
| Q |
1 |
caacatgaaaattctgagagccttgatttatgcaaaggacgatattcccccgcttatagatggaactacaaaattaagggtttgtttttagattatagta |
100 |
Q |
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| T |
34347850 |
caacatgaaaattctgagagccttgatttatgcaaaggacgatattcccccgcttatagatggaactacaaaattaagggtttgtttttagattatagta |
34347751 |
T |
|
| Q |
101 |
acaattaattagtcccttttgtttgtgagacttaattattatattctacagcatggtttaattaaaaaatcttgacttatacacatgacaaacaggttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34347750 |
acaattaattagtcccttttgtttgtgagacttaattattatattctacagcatggtttaattaaaaaatcttgacttatacacatgacaaacaggttag |
34347651 |
T |
|
| Q |
201 |
tcttgaagtactaaggagga |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
34347650 |
tcttgaagtactaaggagga |
34347631 |
T |
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