View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21516_high_4 (Length: 461)
Name: NF21516_high_4
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 10 - 447
Target Start/End: Original strand, 24125267 - 24125704
Alignment:
| Q |
10 |
gaacatttgaaaactttcaaaataagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacctagactcac |
109 |
Q |
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||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24125267 |
gaacatttggaaactttcaaaataagaaaagtgaacactcccgggtggggttgacaaaaactaggtccttgtttccagggatagtctgacctagactcac |
24125366 |
T |
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| Q |
110 |
cccccatcgccctactctattagctccaatataaaatcaaggccaatttccactcgtaataggtacatgatgtatgannnnnnncttcaacggaaccatt |
209 |
Q |
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| T |
24125367 |
cccccatcgccctactctattagctccaatataaaatcaaggccaatttccactcataataggtacatgatgtatgatttttttcttcaacggaaccatt |
24125466 |
T |
|
| Q |
210 |
ttcagaaagaaaaacaagtggaaagttgattccacatgtgtcccatagagagcatatgattcgactgaagattcaacaattaccttcgtaagaaaaagat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24125467 |
ttcagaaagaaaaacaagtggaaagttgattccacatgtgtcctatagagagcacatgatgcgactgaagattcaacaattaccttcgtaagaaaaagat |
24125566 |
T |
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| Q |
310 |
taattctagtggaaagtctatccaataacgtttgctaagagatgacacatatattatatcaaattgtaaaaaactaccatttacttttgttgtagatccg |
409 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
24125567 |
taattccagtggaaagtatatccaataacgtttgctaagagatgacacataaattatatcaaattgtaaaaaactaccatttatttttgttggagatccg |
24125666 |
T |
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| Q |
410 |
ggagagcggcgaccagaagagacggaaacaccacattg |
447 |
Q |
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| T |
24125667 |
ggagagcggcgaccagaagagacggaaacaccacattg |
24125704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 45163287 - 45163166
Alignment:
| Q |
201 |
ggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtcccatagagagcatatgattcgactgaagattcaacaattaccttcgtaa |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||| | | || ||||| |||||||||||||||||| |||||| ||| |
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| T |
45163287 |
ggaaccattttcagaaagaagaacaagtggaaagttgatt-cacatgtgtcccacacatggcccatgatgtgactgaagattcaacaatgaccttcataa |
45163189 |
T |
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| Q |
301 |
gaaaaagattaattctagtggaa |
323 |
Q |
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| T |
45163188 |
gaaaaagattgactctagtggaa |
45163166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 45163412 - 45163326
Alignment:
| Q |
14 |
atttgaaaactttcaaaataagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacc |
100 |
Q |
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| T |
45163412 |
atttgaaaactttcaaaataagtaaagtgaacactcctaggtggggttggcaagaaccaggtccttgctttcagggatagtttgacc |
45163326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 435
Target Start/End: Complemental strand, 45162253 - 45162131
Alignment:
| Q |
315 |
ctagtggaaagtctatccaataacgtttgctaagagatgacacatatattat-atcaaattgt-aaaaaactaccatttacttttgttgtagatccggga |
412 |
Q |
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|||||||||||||||||||||||| ||| | |||||||||||||| ||| | || ||| || |||||||||| ||||| |||||||| ||||| |||| |
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| T |
45162253 |
ctagtggaaagtctatccaataacattttccgagagatgacacataaattttaatataatagtaaaaaaactacaatttatttttgttggagatctggga |
45162154 |
T |
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| Q |
413 |
gagcggcgaccagaagagacgga |
435 |
Q |
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||||||| |||| || ||||||| |
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| T |
45162153 |
gagcggcaaccacaaaagacgga |
45162131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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