View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21516_high_9 (Length: 408)
Name: NF21516_high_9
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 33252443 - 33252113
Alignment:
| Q |
14 |
aagaatatgattcccaatacctttcattccattctacttacatgagtttactcttattctaattaaaaaggtatttcatactcccaaggttattggccac |
113 |
Q |
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| T |
33252443 |
aagattatgattcctaatacctttcattccattctacttacatgagtttactcttattctaattaaaaaggtatttcatactcccaaggttattggccac |
33252344 |
T |
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| Q |
114 |
aatgaaccaagtttataaagattactgataaacctcaatgcaaatataattgcaacatcctatattttgagtagaatgactccttttcttaactcgtgag |
213 |
Q |
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| T |
33252343 |
aatgaaccaagtttataaagattactgataaacctcaatgcaaatataattgcaacatcctata--ttgagtagaatgactccttttcttaactcgtgag |
33252246 |
T |
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| Q |
214 |
tttcatatgacgatattccaatagatcgaaagccttaccc-ttccttatcactacaaaatttcaagatataacttcttcaattcaatatattgcttcctt |
312 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33252245 |
tttcatatgacgatattcgaatagatcgaaagccttaccctttccttatcactgcaaaatttcaagatataacttctttaattcaatatattgcttcctt |
33252146 |
T |
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| Q |
313 |
agataaaactataatccaaaattaaaaatatta |
345 |
Q |
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| T |
33252145 |
agataaaactataatccaaaattaaaaatatta |
33252113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 33252114 - 33252020
Alignment:
| Q |
299 |
tatattgcttccttagataaaactataatccaaaattaaaaatattaata---tttccatctttcacttgttcaactccttctagtctcaaattt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33252114 |
tatattgcttccttagataaaactataatccaaaattaaaaatattaatattctttccatctttcacttgttcaactccttctagtctcaaattt |
33252020 |
T |
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