View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21516_low_1 (Length: 832)

Name: NF21516_low_1
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21516_low_1
NF21516_low_1
[»] chr4 (9 HSPs)
chr4 (123-465)||(51822756-51823097)
chr4 (680-832)||(51823339-51823491)
chr4 (18-128)||(51823561-51823671)
chr4 (471-587)||(51823128-51823244)
chr4 (474-531)||(43480315-43480372)
chr4 (474-531)||(37306457-37306514)
chr4 (474-531)||(51475215-51475272)
chr4 (474-531)||(30111840-30111896)
chr4 (486-527)||(27362642-27362683)
[»] scaffold0922 (1 HSPs)
scaffold0922 (474-527)||(738-791)
[»] chr7 (8 HSPs)
chr7 (474-531)||(47822052-47822109)
chr7 (476-531)||(557428-557483)
chr7 (476-531)||(36738532-36738587)
chr7 (486-531)||(29310473-29310518)
chr7 (474-525)||(39237733-39237784)
chr7 (478-529)||(42815632-42815683)
chr7 (476-529)||(3399039-3399092)
chr7 (486-531)||(25695964-25696009)
[»] chr1 (5 HSPs)
chr1 (474-531)||(19078984-19079041)
chr1 (474-531)||(19126872-19126929)
chr1 (474-531)||(24886110-24886167)
chr1 (474-512)||(932052-932090)
chr1 (474-527)||(29068151-29068204)
[»] chr2 (6 HSPs)
chr2 (475-527)||(6951771-6951823)
chr2 (474-531)||(5140021-5140078)
chr2 (478-527)||(8503850-8503899)
chr2 (474-527)||(42635380-42635433)
chr2 (474-530)||(7709818-7709874)
chr2 (477-531)||(14960699-14960753)
[»] chr8 (5 HSPs)
chr8 (474-529)||(33440557-33440612)
chr8 (486-531)||(30085429-30085474)
chr8 (474-531)||(6580902-6580958)
chr8 (477-530)||(12212198-12212251)
chr8 (477-530)||(12456626-12456679)
[»] chr3 (6 HSPs)
chr3 (476-531)||(13639477-13639532)
chr3 (481-531)||(20909344-20909394)
chr3 (474-531)||(38602881-38602938)
chr3 (474-531)||(29235720-29235777)
chr3 (474-531)||(54186980-54187037)
chr3 (481-527)||(26223195-26223241)
[»] chr5 (4 HSPs)
chr5 (476-531)||(18237187-18237242)
chr5 (474-531)||(30892180-30892237)
chr5 (474-529)||(17190662-17190717)
chr5 (474-527)||(42958511-42958564)
[»] chr6 (1 HSPs)
chr6 (474-531)||(7447617-7447674)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-145; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 123 - 465
Target Start/End: Original strand, 51822756 - 51823097
Alignment:
Q  123 caaaggcaccatttatataatatatctnnnnnnnnctcttatgagttcaacatttttctaccaatcaataaatgttgattcagttgataaggagttagac 222  Q
    ||||| |||||||||||||||||||||        ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  51822756 caaagacaccatttatataatatatctaaaaaaaactcttatgagttcaacatttttctaccgatcaataaatgttgattcagttgataaggagttagac 51822855  T
Q  223 tcataacccactagaatatgagttcaactctcatcgtcagggtgagaacaaagtgaacgctcttagaactatgagaaatatatgaaccccaagacctnnn 322  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||       
T  51822856 tcataacccattagaatatgagttcaactctcatcgtcagggtgaggacaaagtgaacgctcttagaactataagaaatatatgaaccccaagacct-aa 51822954  T
Q  323 nnnnntacatttttctacccctttgactactcatgaaacaatgtctaaaatataggtaaaaagttgggtccttcatatgtaactgttttatttatacttg 422  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51822955 aaaaatacatttttctacccctttgactactcatgaaacaatgtctaaaatataggtaaaaagttgggtccttcatatgtaactgttttatttatacctg 51823054  T
Q  423 caagaagcacatttcaaaattcaaattcttcaataatttaacc 465  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  51823055 caagaagcatatttcaaaattcaaattcttcaataatttaacc 51823097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 680 - 832
Target Start/End: Original strand, 51823339 - 51823491
Alignment:
Q  680 gttcagttgcaattatgaaagtatttcattctctaatgttagtagagtaattcaatattctggtaattaacctaaaatgtaattgggcctttgatcacct 779  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  51823339 gttcagttgcaattatgaaagtatttcattctctaatgttagtagagtaattcaatattctggtaattaacctaaaatgtacttgagcctttgatcacct 51823438  T
Q  780 gtactatataaagaagtatagaaagcaataaagttagttagtaagttctcaat 832  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51823439 gtactatataaagaagtatagaaagcaataaagttagttagttagttctcaat 51823491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 51823671 - 51823561
Alignment:
Q  18 cacctttaccaatccaaaattcattcccctttgagatgatttcactataatctttatcttaggaatttgagctctttaccttttttgtattgtttttcca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||| ||||||||||||||||||||||    
T  51823671 cacctttaccaatccaaaattcattcccctttgagatgatttcactataatctttatctttagtatttgagctctttcccttttttgtattgtttttcca 51823572  T
Q  118 ctttgcaaagg 128  Q
    |||||||||||    
T  51823571 ctttgcaaagg 51823561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 471 - 587
Target Start/End: Original strand, 51823128 - 51823244
Alignment:
Q  471 tggaccacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcacccacaggatggnnnnnnnnnngtacaagatgctaaaatattc 570  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||| | |||||          |||||||||||||||||||||    
T  51823128 tggaccacacattaaaaatggatcgcacataaagtggtgagacccacatgagtttcatccatatgatggttttttttttgtacaagatgctaaaatattc 51823227  T
Q  571 tggtaattaagaattcc 587  Q
    |||||||||||||||||    
T  51823228 tggtaattaagaattcc 51823244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 43480315 - 43480372
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  43480315 accacacattgaaaatggatcccacataaagtggtgagacccacatgagtttcaccca 43480372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 531
Target Start/End: Complemental strand, 37306514 - 37306457
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  37306514 accacacattggaaatggatctcacataaagtggtgagacccacatgagtttcaccca 37306457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 531
Target Start/End: Complemental strand, 51475272 - 51475215
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  51475272 accacacattggaaatggatcccacataaagtggtgagatccacatgggtttcaccca 51475215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 30111840 - 30111896
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||| || || ||| ||||||||||||||||||||| ||||||||||||||    
T  30111840 accacacattggaattg-atcccacataaagtggtgagatccacatgagtttcaccca 30111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 527
Target Start/End: Original strand, 27362642 - 27362683
Alignment:
Q  486 aaatggatcgcacataaagtggtgagatccatatgagtttca 527  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||    
T  27362642 aaatggatctcacgtaaagtggtgagatccacatgagtttca 27362683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 527
Target Start/End: Original strand, 738 - 791
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttca 527  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  738 accacacattgaaaatggatcccacataaagtggtgagacccacatgagtttca 791  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 47822052 - 47822109
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  47822052 accacacattggaaatggatcccacataaagtggtgagatccacatgggtttcaccca 47822109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 531
Target Start/End: Complemental strand, 557483 - 557428
Alignment:
Q  476 cacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    |||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  557483 cacacattaaaaatggatcccacataaagtggtgagacccacatgagtttcaccca 557428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 476 - 531
Target Start/End: Original strand, 36738532 - 36738587
Alignment:
Q  476 cacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||| ||| ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  36738532 cacacgttggaaatggatcccacataaagtggtgagacccacatgagtttcaccca 36738587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 531
Target Start/End: Complemental strand, 29310518 - 29310473
Alignment:
Q  486 aaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  29310518 aaatggatcccacataaagtggtgagacccacatgagtttcaccca 29310473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 525
Target Start/End: Original strand, 39237733 - 39237784
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagttt 525  Q
    ||||||||||| ||||||||| || |||||||||||||| ||| ||||||||    
T  39237733 accacacattggaaatggatcccatataaagtggtgagacccacatgagttt 39237784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 42815632 - 42815683
Alignment:
Q  478 cacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcacc 529  Q
    ||||||||||||||||  | ||||||||||||||| ||| ||||||||||||    
T  42815632 cacattgaaaatggattccccataaagtggtgagacccacatgagtttcacc 42815683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 529
Target Start/End: Complemental strand, 3399092 - 3399039
Alignment:
Q  476 cacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcacc 529  Q
    ||||||||||||||  |||  |||||||||||||||| ||| ||||||||||||    
T  3399092 cacacattgaaaataaatcttacataaagtggtgagacccacatgagtttcacc 3399039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 531
Target Start/End: Original strand, 25695964 - 25696009
Alignment:
Q  486 aaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||| | |||||||| |||||||||||| ||||||||||||||    
T  25695964 aaatggacctcacataaaatggtgagatccacatgagtttcaccca 25696009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 19078984 - 19079041
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  19078984 accacacattggaaatggatcccacataaagtggtgagacccacatgagtttcaccca 19079041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 19126872 - 19126929
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  19126872 accacacattggaaatggatcccacataaagtggtgagacccacatgagtttcaccca 19126929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 24886110 - 24886167
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||| |||| |||| ||||||||| ||||||| ||| ||||||||||||||    
T  24886110 accacacattgtaaatagatcccacataaagcggtgagacccacatgagtttcaccca 24886167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 474 - 512
Target Start/End: Original strand, 932052 - 932090
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgaga 512  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  932052 accacacattggaaatggatcccacataaagtggtgaga 932090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 527
Target Start/End: Original strand, 29068151 - 29068204
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttca 527  Q
    ||||||||||| |||| |||| |||||||| |||||||| ||| ||||||||||    
T  29068151 accacacattggaaattgatcccacataaaatggtgagacccacatgagtttca 29068204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 475 - 527
Target Start/End: Original strand, 6951771 - 6951823
Alignment:
Q  475 ccacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttca 527  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  6951771 ccacacattgaaaatggatcccacataaagtggtgagacccacatgagtttca 6951823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 474 - 531
Target Start/End: Complemental strand, 5140078 - 5140021
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||||||||||||| ||||||||||||||| | ||  ||||||||||||||    
T  5140078 accacacattgaaaatggatcccacataaagtggtgaaacccgcatgagtttcaccca 5140021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 527
Target Start/End: Original strand, 8503850 - 8503899
Alignment:
Q  478 cacattgaaaatggatcgcacataaagtggtgagatccatatgagtttca 527  Q
    |||||| |||||| ||| ||||||||||||||||||||| ||||||||||    
T  8503850 cacattaaaaatgaatctcacataaagtggtgagatccacatgagtttca 8503899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 527
Target Start/End: Original strand, 42635380 - 42635433
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttca 527  Q
    ||||||||||||||||||||  ||||||||||| ||||| ||| ||||||||||    
T  42635380 accacacattgaaaatggattccacataaagtgatgagacccacatgagtttca 42635433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 530
Target Start/End: Original strand, 7709818 - 7709874
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccc 530  Q
    ||||||||||| |||| |||| ||||||||||||||||  ||| |||||||||||||    
T  7709818 accacacattggaaatagatcccacataaagtggtgagtcccacatgagtttcaccc 7709874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 477 - 531
Target Start/End: Complemental strand, 14960753 - 14960699
Alignment:
Q  477 acacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    |||||||||||||||||| |||||||| | ||||||   ||||||||||||||||    
T  14960753 acacattgaaaatggatctcacataaaatagtgagacttatatgagtttcaccca 14960699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 474 - 529
Target Start/End: Complemental strand, 33440612 - 33440557
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcacc 529  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||    
T  33440612 accacacattggaaatggatcccacataaagtggtgagacccacatgagtttcacc 33440557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 486 - 531
Target Start/End: Complemental strand, 30085474 - 30085429
Alignment:
Q  486 aaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  30085474 aaatggatcccacataaagtggtgagatccacatgagtttcaccca 30085429  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 6580902 - 6580958
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||| ||||| ||| ||||||||||||||||| ||| ||||||||||||||    
T  6580902 accacacattggaaatg-atcccacataaagtggtgagacccacatgagtttcaccca 6580958  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 530
Target Start/End: Original strand, 12212198 - 12212251
Alignment:
Q  477 acacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccc 530  Q
    |||| ||| |||||| || |||||||||||||||||||||||||| ||| ||||    
T  12212198 acactttggaaatgggtcccacataaagtggtgagatccatatgaattttaccc 12212251  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 530
Target Start/End: Original strand, 12456626 - 12456679
Alignment:
Q  477 acacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccc 530  Q
    |||| ||| |||||| || |||||||||||||||||||||||||| ||| ||||    
T  12456626 acactttggaaatgggtcccacataaagtggtgagatccatatgaattttaccc 12456679  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 531
Target Start/End: Original strand, 13639477 - 13639532
Alignment:
Q  476 cacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  13639477 cacacattggaaatggatctcacataaagtggtgagacccacatgagtttcaccca 13639532  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 481 - 531
Target Start/End: Complemental strand, 20909394 - 20909344
Alignment:
Q  481 attgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  20909394 attgaaaatggatcccacataaagtggtgagacccacatgagtttcaccca 20909344  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 38602881 - 38602938
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||||||||||||| |||||||||| ||||||  || ||||||||||||||    
T  38602881 accacacattgaaaatggatcccacataaagtagtgagactcacatgagtttcaccca 38602938  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 29235720 - 29235777
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||  |||||||||  ||||||||||||||||  |||||||||||||||||    
T  29235720 accacacattagaaatggatccaacataaagtggtgagactcatatgagtttcaccca 29235777  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 531
Target Start/End: Complemental strand, 54187037 - 54186980
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||  ||||||||| |||||||| ||||||||| || ||||||||||||||    
T  54187037 accacacattagaaatggatcccacataaaatggtgagattcacatgagtttcaccca 54186980  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 481 - 527
Target Start/End: Complemental strand, 26223241 - 26223195
Alignment:
Q  481 attgaaaatggatcgcacataaagtggtgagatccatatgagtttca 527  Q
    |||||||||||||| ||||||||||| ||||||||| |||| |||||    
T  26223241 attgaaaatggatcccacataaagtgatgagatccacatgaatttca 26223195  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 476 - 531
Target Start/End: Complemental strand, 18237242 - 18237187
Alignment:
Q  476 cacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    |||||||||||||| |||| ||||||||||||||||| ||| |||| |||||||||    
T  18237242 cacacattgaaaatagatcccacataaagtggtgagacccacatgaatttcaccca 18237187  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 30892180 - 30892237
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||  ||||||||| |||||||| ||||||||  |||||||||||||||||    
T  30892180 accacacattagaaatggatcccacataaaatggtgagactcatatgagtttcaccca 30892237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 529
Target Start/End: Complemental strand, 17190717 - 17190662
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcacc 529  Q
    ||||||||||  ||||||||| ||||||||||||||||| ||| || |||||||||    
T  17190717 accacacattagaaatggatcccacataaagtggtgagacccacataagtttcacc 17190662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 527
Target Start/End: Original strand, 42958511 - 42958564
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttca 527  Q
    ||||| ||||| ||||||||| ||||||||||||||||| ||  ||||||||||    
T  42958511 accacgcattggaaatggatcccacataaagtggtgagacccgcatgagtttca 42958564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 531
Target Start/End: Complemental strand, 7447674 - 7447617
Alignment:
Q  474 accacacattgaaaatggatcgcacataaagtggtgagatccatatgagtttcaccca 531  Q
    ||||||||||  ||||||||| ||||||||||||||||| ||| ||||| ||||||||    
T  7447674 accacacattagaaatggatcccacataaagtggtgagacccacatgagcttcaccca 7447617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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