View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21516_low_10 (Length: 386)

Name: NF21516_low_10
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21516_low_10
NF21516_low_10
[»] chr3 (3 HSPs)
chr3 (17-375)||(29555335-29555693)
chr3 (162-293)||(50295459-50295586)
chr3 (59-171)||(50706403-50706514)
[»] chr1 (2 HSPs)
chr1 (158-259)||(19825121-19825221)
chr1 (216-259)||(2072461-2072504)
[»] chr7 (2 HSPs)
chr7 (223-281)||(46963923-46963981)
chr7 (223-280)||(44338199-44338256)
[»] chr4 (2 HSPs)
chr4 (223-281)||(16870560-16870618)
chr4 (216-270)||(54147572-54147626)
[»] chr2 (3 HSPs)
chr2 (223-281)||(8986122-8986180)
chr2 (229-299)||(38584277-38584347)
chr2 (158-226)||(38584140-38584208)
[»] chr5 (3 HSPs)
chr5 (223-280)||(24136719-24136776)
chr5 (216-280)||(11335480-11335543)
chr5 (158-270)||(9511733-9511841)
[»] chr8 (3 HSPs)
chr8 (91-162)||(41694893-41694964)
chr8 (223-280)||(20241876-20241933)
chr8 (223-280)||(20251134-20251191)
[»] chr6 (2 HSPs)
chr6 (216-290)||(21861953-21862027)
chr6 (276-324)||(28063835-28063883)


Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 29555693 - 29555335
Alignment:
Q  17 caaaggagatgagcatccaaagcagcagcaactgaagggaggaaaccatatcaaacaaaacccgaattaaaccgaagagccaataaagggagaagtaacc 116  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  29555693 caaaggagatgagcatccaaaggagcaacaactgaagggaggaaaccatatcaaacaaaaccggaatcaaaccgaagagccaataaagggagaagtaacc 29555594  T
Q  117 aaaatgttcaaatatgcctttaatgagaactcttcacaaataaattgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaacta 216  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  29555593 aaaatgttcaaatatgcctttaatgagaactcttcacaaacaaattgtgatcacttgactaactaagcaactaaattgtgagcaattaactcaccaacta 29555494  T
Q  217 aacaatcaaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaactgaaccaaattaatctaaacaaaaccaaaccaagac 316  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29555493 aacaatcaaatcaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaactgaaccaaattaatctaaacaaaaccaaaccaagac 29555394  T
Q  317 aaattgaataacaccaatgcgaaccaatacgaatggagcaaaggagagacgcaatgaga 375  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29555393 aaattgaataacaccaatgcgaaccaatacgaatggaacaaaggagagacgcaatgaga 29555335  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 293
Target Start/End: Complemental strand, 50295586 - 50295459
Alignment:
Q  162 tgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaaccaattgtgagcactatcttaactcacccaacatc 261  Q
    ||||| |||| ||||||| || |||  ||||||||||||||| || ||| ||  |||||||||    ||||||| ||||||||| |||||| |||||| |    
T  50295586 tgtgagcactcgactcacgaaacaaccaaattgtgagcacttgacccactaaacaaacaatca----aattgtgtgcactatctcaactcatccaacaac 50295491  T
Q  262 caaataaatcggaccaaactgaaccaaattaa 293  Q
    |||| |||| | ||||||| |||| |||||||    
T  50295490 caaacaaattgaaccaaacagaacgaaattaa 50295459  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 50706514 - 50706403
Alignment:
Q  59 aaaccatatcaaacaaaacccgaattaaaccgaagagccaataaagggagaagtaaccaaaatgttcaaatatgcctttaatgagaactcttcacaaata 158  Q
    |||||||||||||| ||| |  ||| |||  ||||||| |||| || |||||| | | ||||| |||||||||| ||| ||||||||||||||||||| |    
T  50706514 aaaccatatcaaaccaaatcgaaatcaaatagaagagcaaatagagagagaagca-cgaaaatattcaaatatgtcttcaatgagaactcttcacaaaca 50706416  T
Q  159 aattgtgatcact 171  Q
    |||| ||| ||||    
T  50706415 aattttgagcact 50706403  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 19825121 - 19825221
Alignment:
Q  158 aaattgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaaccaattgtgagcactatcttaactcacccaa 257  Q
    ||||||||| |||| ||||| | || |||  |||||||||||||||| ||||||||| |||||| ||||| ||||||||||| |||||| ||||||| ||    
T  19825121 aaattgtgagcactcgactcgccaaacaaccaaattgtgagcactta-ctcaccaaccaaacaaacaaacaaattgtgagcattatcttgactcaccaaa 19825219  T
Q  258 ca 259  Q
    ||    
T  19825220 ca 19825221  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 2072461 - 2072504
Alignment:
Q  216 aaacaatcaaaccaattgtgagcactatcttaactcacccaaca 259  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||    
T  2072461 aaacaatcaaaccaatggtgagccctatcttgactcacccaaca 2072504  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 46963923 - 46963981
Alignment:
Q  223 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaact 281  Q
    ||||||||||||||||||||| || |||||||||||| ||||| |||| | ||||||||    
T  46963923 caaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaact 46963981  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 44338256 - 44338199
Alignment:
Q  223 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 280  Q
    ||||| ||||||||||||||| || |||||||||||| ||||| |||| | |||||||    
T  44338256 caaactaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 44338199  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 16870618 - 16870560
Alignment:
Q  223 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaact 281  Q
    ||||||||||||||||||||| || |||||||||||| ||||| |||| | ||||||||    
T  16870618 caaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaact 16870560  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 54147626 - 54147572
Alignment:
Q  216 aaacaatcaaaccaattgtgagcactatcttaactcacccaacatccaaataaat 270  Q
    |||||| ||||||||||||||| |||||||| ||||||| |||| ||||| ||||    
T  54147626 aaacaaacaaaccaattgtgaggactatcttgactcacctaacaaccaaacaaat 54147572  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 8986180 - 8986122
Alignment:
Q  223 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaact 281  Q
    ||||||||||||||||||||| || |||||||||||| ||||| |||| | ||||||||    
T  8986180 caaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaact 8986122  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 38584277 - 38584347
Alignment:
Q  229 aattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaactgaaccaaattaatctaaa 299  Q
    ||||||||||||||| || |||||||||||| ||||| |||| | |||||||| |||| ||| || |||||    
T  38584277 aattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaactaaaccgaataaaactaaa 38584347  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 38584140 - 38584208
Alignment:
Q  158 aaattgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaa 226  Q
    ||||||||| ||||| |||||| || | |  ||||||||||||||| |||||||||| |||||| ||||    
T  38584140 aaattgtgagcacttaactcaccaaactaccaaattgtgagcacttgactcaccaaccaaacaaccaaa 38584208  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 24136776 - 24136719
Alignment:
Q  223 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 280  Q
    ||||||||||||||||||||| || |||||||||||| ||||| |||| | |||||||    
T  24136776 caaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 24136719  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 11335480 - 11335543
Alignment:
Q  216 aaacaatcaaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 280  Q
    |||||| |||||||||||||||||||||||| ||||| |||||| ||||| |||| | |||||||    
T  11335480 aaacaaacaaaccaattgtgagcactatcttgactca-ccaacaaccaaacaaattgaaccaaac 11335543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 9511841 - 9511733
Alignment:
Q  158 aaattgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaaccaattgtgagcactatcttaactcacccaa 257  Q
    ||||||||| |||| ||||||| || |||   || ||||||||||  |||||||||    |||| ||||| ||||||||| |||||||||||||||| ||    
T  9511841 aaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaa----acaaacaaacgaattgtgaggactatcttaactcacctaa 9511746  T
Q  258 catccaaataaat 270  Q
    || ||||| ||||    
T  9511745 caaccaaacaaat 9511733  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 41694893 - 41694964
Alignment:
Q  91 aagagccaataaagggagaagtaaccaaaatgttcaaatatgcctttaatgagaactcttcacaaataaatt 162  Q
    ||||||| ||| | ||||||  ||| ||| |||||||||||| ||||||||| ||||||||||||| |||||    
T  41694893 aagagcctatagaaggagaaccaactaaattgttcaaatatgtctttaatgataactcttcacaaacaaatt 41694964  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 20241933 - 20241876
Alignment:
Q  223 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 280  Q
    ||||| ||||||||||||||| || |||||||||||| ||||| |||| | |||||||    
T  20241933 caaactaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 20241876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 20251134 - 20251191
Alignment:
Q  223 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 280  Q
    ||||| ||||||||||||||| || |||||||||||| ||||| |||| | |||||||    
T  20251134 caaactaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 20251191  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 21862027 - 21861953
Alignment:
Q  216 aaacaatcaaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaactgaaccaaat 290  Q
    |||||| ||||||||||||||| ||||| || |||||| ||| | |||||||||| | |||||||  ||||||||    
T  21862027 aaacaaacaaaccaattgtgagaactattttgactcactcaaaaaccaaataaattgaaccaaacgaaaccaaat 21861953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 28063835 - 28063883
Alignment:
Q  276 caaactgaaccaaattaatctaaacaaaaccaaaccaagacaaattgaa 324  Q
    |||||||||||||||||| |  ||||||| |||||||| ||||||||||    
T  28063835 caaactgaaccaaattaaaccgaacaaaatcaaaccaatacaaattgaa 28063883  T

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