View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21516_low_13 (Length: 340)
Name: NF21516_low_13
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 6073021 - 6073185
Alignment:
| Q |
4 |
tggagacgagaacttaatacattattacttgaaaa-ggtttggtgaacttgccaaatttatcatcatatataataacaacagtgcttaaagtttgtgttt |
102 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6073021 |
tggagacgataacttaatacattattacttgaaaaaggtttagtgaacttgccaaatttatcttcatatataataacaacagtgcttaaagtttgtgtct |
6073120 |
T |
|
| Q |
103 |
gatcatggatacgtaggtattttgcctttattatcgttctttatcaaatacttatatatgtaaat |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6073121 |
gatcatggatacgtaggtattttgcctttattatcgttctttatcaaatacttatatatgtaaat |
6073185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 69 - 312
Target Start/End: Original strand, 6079937 - 6080186
Alignment:
| Q |
69 |
tatataataacaacagtgcttaaagtttgtgtttgatcatggatacgtaggtatttt-gcctttattatcgttctttatcaaatacttatatatgtaaat |
167 |
Q |
| |
|
||||||||||||||| | |||||||||||| || ||||||| |||| ||| | ||| | |||| ||| |||||||| |||||||| |||||||||||| |
|
|
| T |
6079937 |
tatataataacaacaatacttaaagtttgtatt-gatcatgaatacttagctctttaagtctttgctatagttctttaacaaatactgatatatgtaaat |
6080035 |
T |
|
| Q |
168 |
tttaaatcacaagtatttctataacacatgaaaaaatgagcttggttcata-agtcatagataaattcgc-----taatttcaatacaacacacaaaaat |
261 |
Q |
| |
|
|||||||||||||||||| ||||||||| | |||| ||||||||||| || ||||||||||||||| | |||||| |||||| | ||||||||| |
|
|
| T |
6080036 |
tttaaatcacaagtatttgtataacacaaggaaaatagagcttggttcttagagtcatagataaattttctaatttaatttgaatacagctcacaaaaat |
6080135 |
T |
|
| Q |
262 |
aagcaatcaactaagacatgtatcgttactgcaatagacaattataatttt |
312 |
Q |
| |
|
|| || | || ||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
6080136 |
aaacatttaattaagacatgtacaattattgcaatagacaattataatttt |
6080186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 6089401 - 6089605
Alignment:
| Q |
25 |
ttattacttgaaaaggtttggtgaacttgccaaatttatcatcatatataataacaacagtgcttaaagtttgtgtttgatcatggatacgtaggtattt |
124 |
Q |
| |
|
|||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| | |||||| ||||| |||||| | |||||| ||| | ||| |
|
|
| T |
6089401 |
ttattacttgaaaatatttggtgcactttccaaatttatcatcatatataataacaa---tacttaaattttgtatttgattagggatacttagctcttt |
6089497 |
T |
|
| Q |
125 |
tgcctttattatcgttctttatcaaatacttatatatgtaaattttaaatcacaagtatttctataacacatgaaaaaatgagcttggttcata-agtca |
223 |
Q |
| |
|
| ||||| ||| ||| |||| |||||||| ||||| ||||||||| |||||||||| || | ||||||| | |||| || |||||||||||| ||||| |
|
|
| T |
6089498 |
agtctttactatagttttttaacaaatactggtatatataaattttacatcacaagtaattttttaacacaaggaaaactgggcttggttcatagagtca |
6089597 |
T |
|
| Q |
224 |
tagataaa |
231 |
Q |
| |
|
|||||||| |
|
|
| T |
6089598 |
tagataaa |
6089605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 312
Target Start/End: Complemental strand, 6114064 - 6113751
Alignment:
| Q |
2 |
tgtggagacgagaacttaatacattattacttgaaaaggtttggtgaacttgccaaatttatcatcatatataataacaacagtgcttaaagtttgtgtt |
101 |
Q |
| |
|
||||||||||| |||||| | |||| ||||||||| ||||||| || ||||||||||||||||||||||||| | || | | |||| ||||| || |
|
|
| T |
6114064 |
tgtggagacgataacttataattttatgacttgaaaatatttggtgcacctgccaaatttatcatcatatataatgaaaata---cctaaattttgtatt |
6113968 |
T |
|
| Q |
102 |
tgatcatggatacgtaggtattttgcctttattatcgttctttatcaaatacttatatatgtaaattttaaatcacaagtatttctataacacatgaaaa |
201 |
Q |
| |
|
|||| | |||||| || | ||| | ||||| ||| |||||| | |||||||| ||| ||||||||||| ||||||||||||||| || || | ||||| |
|
|
| T |
6113967 |
tgattagggatacttatctctttcgtctttactatagttcttcaacaaatactggtatttgtaaattttacatcacaagtatttctttatcataagaaaa |
6113868 |
T |
|
| Q |
202 |
aatgagcttggttcata-agtcatagataa--attc---gctaatttcaatacaacacacaaaaataagcaatcaactaagacatgtatcgttactgcaa |
295 |
Q |
| |
|
| | |||||||||||| |||||||||||| |||| |||||| |||||||||||||||||||| || | || ||||||||||| ||| ||||| |
|
|
| T |
6113867 |
actaggcttggttcatagagtcatagataaacattctaatttaatttgaatacaacacacaaaaataaacatttaattaagacatgtacaattattgcaa |
6113768 |
T |
|
| Q |
296 |
tagacaattataatttt |
312 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
6113767 |
tagataattataatttt |
6113751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 312
Target Start/End: Complemental strand, 6120928 - 6120642
Alignment:
| Q |
25 |
ttattacttgaaaaggtttggtgaacttgccaaatttatcatcatatataataacaacagtgcttaaagtttgtgtttgatcatggatacgtaggtattt |
124 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||| | | |||| ||||| |||||| | |||||| | | ||| |
|
|
| T |
6120928 |
ttattacttggaaatatttggtgcacttgccaaatttatcatcatatataatgacaa---tacctaaattttgtatttgattagggatactcatctcttt |
6120832 |
T |
|
| Q |
125 |
tgcctttattatcgttctttatcaaatacttatatatgtaaattttaaatcacaagtatttctataacacatgaaaaaatgagcttggttcata-agtca |
223 |
Q |
| |
|
| ||||| ||| ||||||| || ||| ||||||||||||||| ||||||||||||||| || |||| | |||| || | |||||||||| |||| |
|
|
| T |
6120831 |
cgtctttactatagttcttt----aacactggtatatgtaaattttacatcacaagtatttctttatcacaaggaaaattgggtttggttcatagagtcg |
6120736 |
T |
|
| Q |
224 |
tagataa--attc---gctaatttcaatacaacacacaaaaataagcaatcaactaagacatgtatcgttactgcaatagacaattataatttt |
312 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||||||| || || | || ||||||||||| ||| ||||||| | |||||||||||| |
|
|
| T |
6120735 |
tagataaacattctaatttaatttgaatacaacacacaaaaacaaacatttaattaagacatgtacaattattgcaataaataattataatttt |
6120642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12809513 - 12809441
Alignment:
| Q |
1 |
atgtggagacgagaacttaatacattattacttgaaaaggtttggtgaacttgccaaatttatcatcatatat |
73 |
Q |
| |
|
||||||||| || |||||| ||| ||||||||||||| ||| |||| ||||||||||| | ||||| ||||| |
|
|
| T |
12809513 |
atgtggagatgataacttattactttattacttgaaactgttaggtgcacttgccaaatctgtcatcctatat |
12809441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University