View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21516_low_14 (Length: 323)
Name: NF21516_low_14
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 30272995 - 30273231
Alignment:
| Q |
18 |
cttccaaattgataatttcagtttctttgttctgcaccttcatgtcatctttggtttgcacaaa---------------ttg------ctctctcttgtt |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
30272995 |
cttccaaattgataatttcagtttctttgttctgcaccttcatgtcatctttggtttgcacaaaagctttcctgtgcacttgtctaggctctctcttgtt |
30273094 |
T |
|
| Q |
97 |
gataagttcgtgttcctcctgagttggtgcaacgttgactcttttaaaatggttgtaaaaatcatgcatgtttccatattcgatcccagcaataaaagca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
30273095 |
gataagttcgtgttcctcctgagttggtgcaactttgactcttttaaaatggttgtaaaaatcatgcatgtttccatattcaatcccagcaataaaagaa |
30273194 |
T |
|
| Q |
197 |
aatattgttctctccgcaaggattttatattttggtt |
233 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30273195 |
aatattgttctctccacaaggattttatattttggtt |
30273231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 30273389 - 30273296
Alignment:
| Q |
230 |
ggtttcattttttcggatccatctatacagagaggttaacatgtggctgctaattttccggattcatctatacactagttctactacaaataag |
323 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30273389 |
ggtttcattttttcagatccatctatacagagaggttaacatgtggctgctaattttccggattcatctaaacactagttctactacaaataag |
30273296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 12089163 - 12089226
Alignment:
| Q |
18 |
cttccaaattgataatttcagtttctttgttctgcaccttcatgtcatctttggtttgcacaaa |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||||| |
|
|
| T |
12089163 |
cttccaaattgataatttcagtttctttgttttgtacattcatgttatctttggtttgcacaaa |
12089226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 12089254 - 12089295
Alignment:
| Q |
88 |
tctcttgttgataagttcgtgttcctcctgagttggtgcaac |
129 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
12089254 |
tctcttgttgatcagttcttgttcctcctgagttggtgcaac |
12089295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University