View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21516_low_15 (Length: 322)
Name: NF21516_low_15
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 30272995 - 30273318
Alignment:
| Q |
18 |
cttccaaattgataatttcagtttctttgttctgcaccttcatgtcatctttggtttgcacaaa---------------ttg------ctctctcttgtt |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
30272995 |
cttccaaattgataatttcagtttctttgttctgcaccttcatgtcatctttggtttgcacaaaagctttcctgtgcacttgtctaggctctctcttgtt |
30273094 |
T |
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| Q |
97 |
gataagttcgtgttcctcctgagttggtgcaacgttgactcttttaaaatggttgtaaaaatcatgcatgtttccatattcgatcccagcaataaaagaa |
196 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30273095 |
gataagttcgtgttcctcctgagttggtgcaactttgactcttttaaaatggttgtaaaaatcatgcatgtttccatattcaatcccagcaataaaagaa |
30273194 |
T |
|
| Q |
197 |
aatattgttctctccacaaggattttatattttggttcaattttgagctccatatccactaacacccggataaaatgaccaaaagttctatcaatcattg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
30273195 |
aatattgttctctccacaaggattttatattttggttcaattttgagctccatatccactaacacccgaacaaaatgaccaaaagttctatcaatcattg |
30273294 |
T |
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| Q |
297 |
gcttatttgtagtagaactagtgt |
320 |
Q |
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|||||||||||||||||||||||| |
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| T |
30273295 |
gcttatttgtagtagaactagtgt |
30273318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 319
Target Start/End: Original strand, 30434538 - 30434668
Alignment:
| Q |
189 |
taaaagaaaatattgttctctccacaaggattttatattttggttcaattttgagctccatatccactaacacccggataaaatgaccaaaagttctatc |
288 |
Q |
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||||||||||||||||||| || |||| |||||||||||||| || ||||||||| ||||| |||||||||||||| | ||||||| ||||||||||||| |
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| T |
30434538 |
taaaagaaaatattgttctttcaacaaagattttatattttgattaaattttgagttccatgtccactaacacccgaacaaaatgagcaaaagttctatc |
30434637 |
T |
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| Q |
289 |
aatcattggcttatttgtagtagaactagtg |
319 |
Q |
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| ||| ||||||||| |||||| ||||| |
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| T |
30434638 |
aggtattaacttatttgtggtagaaatagtg |
30434668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 12089163 - 12089226
Alignment:
| Q |
18 |
cttccaaattgataatttcagtttctttgttctgcaccttcatgtcatctttggtttgcacaaa |
81 |
Q |
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||||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||||| |
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| T |
12089163 |
cttccaaattgataatttcagtttctttgttttgtacattcatgttatctttggtttgcacaaa |
12089226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 12089254 - 12089295
Alignment:
| Q |
88 |
tctcttgttgataagttcgtgttcctcctgagttggtgcaac |
129 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
12089254 |
tctcttgttgatcagttcttgttcctcctgagttggtgcaac |
12089295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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