View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21516_low_18 (Length: 277)
Name: NF21516_low_18
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 52331359 - 52331099
Alignment:
| Q |
1 |
tcacgagcattgttgagatagtcttttctcatcttttcatgaaggtttctcaaataagtctcccctgccagcaaagcagcaagtggatcatggatcacat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52331359 |
tcacgagcattgttgagatagtcttttctcatcttttcatgtaggtttctcaaataagtctcccctgccagcaaagcagcaagtggatcatggatcacat |
52331260 |
T |
|
| Q |
101 |
gcttccacatagcccttcctgcagccgtttggcaagctgacctttgaaggaaatcccattccttttcaattgttgcgtggacttgtcgaacagggtcagt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52331259 |
gcttccacatagcccttcctgcagccgtttggcaagctgacctttgaaggaaatcccattccttttcaattgttgcgtggacttgtcgaacagggtcagt |
52331160 |
T |
|
| Q |
201 |
atgtaacaagtctggaaggtttagctctggccatgcttggttgtcttgcaagccatttact |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52331159 |
atgtaacaagtctggaaggtttagctctggccatgcttggttgtcttgcaagccatttact |
52331099 |
T |
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