View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21516_low_19 (Length: 257)

Name: NF21516_low_19
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21516_low_19
NF21516_low_19
[»] chr3 (1 HSPs)
chr3 (20-242)||(32535553-32535768)
[»] chr6 (2 HSPs)
chr6 (38-73)||(33699453-33699488)
chr6 (38-103)||(2725790-2725855)
[»] chr7 (4 HSPs)
chr7 (38-103)||(31756771-31756836)
chr7 (33-73)||(3756514-3756554)
chr7 (37-73)||(16862827-16862863)
chr7 (36-72)||(41340872-41340908)
[»] chr5 (5 HSPs)
chr5 (41-73)||(37442641-37442673)
chr5 (34-72)||(32303603-32303641)
chr5 (38-72)||(34398144-34398178)
chr5 (38-71)||(7599609-7599642)
chr5 (38-71)||(28218045-28218078)
[»] chr1 (5 HSPs)
chr1 (39-103)||(48729079-48729143)
chr1 (37-103)||(29856015-29856082)
chr1 (37-103)||(32815750-32815816)
chr1 (41-103)||(50899052-50899114)
chr1 (38-71)||(27541287-27541320)
[»] chr8 (1 HSPs)
chr8 (38-73)||(12750294-12750329)
[»] chr4 (5 HSPs)
chr4 (38-93)||(33648297-33648352)
chr4 (39-73)||(30863265-30863299)
chr4 (38-103)||(42747166-42747231)
chr4 (37-73)||(24393687-24393723)
chr4 (37-73)||(36139072-36139108)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 32535553 - 32535768
Alignment:
Q  20 ttctctgctaaacttttggagaattgctcttcttccatctgtttttgctcattcgcgccgaaaaagacacatgcatgagttaacacccatgacccataag 119  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||  |||||| |||||| ||||| |||||| ||||       ||     
T  32535553 ttctcggctaaatttttggaaaattgctcttcttccatctgtttttgctcattcacgttgaaaaatacacatacatgaattaacatccat-------aat 32535645  T
Q  120 agtcaataccacacccataagagtttactggcctacgtaaacatcacgctatagtcctacaaggtatgcctcatttgtaagctcttcaccaggctcgagt 219  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32535646 agtcaataccacacccataagagtctactagcctatgtaaacatcacgctatagtcctacaaggtatgcctcatttgtaagctcttcacccggctcgagt 32535745  T
Q  220 ttatgtctcatttcaaagtattt 242  Q
    |||||||||||||||||||||||    
T  32535746 ttatgtctcatttcaaagtattt 32535768  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 33699488 - 33699453
Alignment:
Q  38 gagaattgctcttcttccatctgtttttgctcattc 73  Q
    ||||||||||||||||||||||||||||||||||||    
T  33699488 gagaattgctcttcttccatctgtttttgctcattc 33699453  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 2725790 - 2725855
Alignment:
Q  38 gagaattgctcttcttccatctgtttttgctcattcgcgccgaaaaagacacatgcatgagttaac 103  Q
    |||||||||||||||| ||||| ||||||||||||| ||| || ||| |||| ||| |||||||||    
T  2725790 gagaattgctcttcttacatctttttttgctcattcccgctgagaaacacacttgcgtgagttaac 2725855  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 31756771 - 31756836
Alignment:
Q  38 gagaattgctcttcttccatctgtttttgctcattcgcgccgaaaaagacacatgcatgagttaac 103  Q
    ||||||||||||||| |||||| |||||||||||||   | |||||| |||| |||||||||||||    
T  31756771 gagaattgctcttctcccatctatttttgctcattccgactgaaaaatacacctgcatgagttaac 31756836  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 3756554 - 3756514
Alignment:
Q  33 ttttggagaattgctcttcttccatctgtttttgctcattc 73  Q
    |||| ||||||||||||||| ||| ||||||||||||||||    
T  3756554 ttttagagaattgctcttctcccacctgtttttgctcattc 3756514  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 16862863 - 16862827
Alignment:
Q  37 ggagaattgctcttcttccatctgtttttgctcattc 73  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  16862863 ggagaattgcttttctcccatctgtttttgctcattc 16862827  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 41340872 - 41340908
Alignment:
Q  36 tggagaattgctcttcttccatctgtttttgctcatt 72  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  41340872 tggagaattgctcttctcccatctgtttttgttcatt 41340908  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 37442673 - 37442641
Alignment:
Q  41 aattgctcttcttccatctgtttttgctcattc 73  Q
    |||||||||||||||||||||||||||||||||    
T  37442673 aattgctcttcttccatctgtttttgctcattc 37442641  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 32303603 - 32303641
Alignment:
Q  34 tttggagaattgctcttcttccatctgtttttgctcatt 72  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  32303603 tttggataattgctcttcttccatctgattttgctcatt 32303641  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 34398178 - 34398144
Alignment:
Q  38 gagaattgctcttcttccatctgtttttgctcatt 72  Q
    ||||||||||||||||||||||||||||| |||||    
T  34398178 gagaattgctcttcttccatctgtttttggtcatt 34398144  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 7599609 - 7599642
Alignment:
Q  38 gagaattgctcttcttccatctgtttttgctcat 71  Q
    |||||||||||||||||||||| |||||||||||    
T  7599609 gagaattgctcttcttccatctatttttgctcat 7599642  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 28218078 - 28218045
Alignment:
Q  38 gagaattgctcttcttccatctgtttttgctcat 71  Q
    |||||||||||||||||||| |||||||||||||    
T  28218078 gagaattgctcttcttccatatgtttttgctcat 28218045  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 48729143 - 48729079
Alignment:
Q  39 agaattgctcttcttccatctgtttttgctcattcgcgccgaaaaagacacatgcatgagttaac 103  Q
    ||||||| ||||||||||||| ||||||||||||  | | |||||| |||||||| |||||||||    
T  48729143 agaattgttcttcttccatctatttttgctcatttccactgaaaaatacacatgcgtgagttaac 48729079  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 29856082 - 29856015
Alignment:
Q  37 ggagaattgctcttcttccatctgtttttgctcattcgcgccga-aaaagacacatgcatgagttaac 103  Q
    |||||||||||||||| | |||||||||||||||||  ||| || |||| |||| |||||||||||||    
T  29856082 ggagaattgctcttctccaatctgtttttgctcatttccgctgagaaaatacacctgcatgagttaac 29856015  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 32815750 - 32815816
Alignment:
Q  37 ggagaattgctcttcttccatctgtttttgctcattcgcgccgaaaaagacacatgcatgagttaac 103  Q
    ||||||||| |||||| ||||||||||||| |||||| | | | |||| |||||||| |||||||||    
T  32815750 ggagaattgttcttctcccatctgtttttggtcattcccactggaaaatacacatgcgtgagttaac 32815816  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 50899052 - 50899114
Alignment:
Q  41 aattgctcttcttccatctgtttttgctcattcgcgccgaaaaagacacatgcatgagttaac 103  Q
    ||||||||||||  ||||||||||||||||||  ||| || ||| |||||||| |||||||||    
T  50899052 aattgctcttctctcatctgtttttgctcatttccgctgagaaatacacatgcgtgagttaac 50899114  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 27541320 - 27541287
Alignment:
Q  38 gagaattgctcttcttccatctgtttttgctcat 71  Q
    |||||||| |||||||||||||||||||||||||    
T  27541320 gagaattgttcttcttccatctgtttttgctcat 27541287  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 12750329 - 12750294
Alignment:
Q  38 gagaattgctcttcttccatctgtttttgctcattc 73  Q
    ||||||||||||||| ||||||||||||||||||||    
T  12750329 gagaattgctcttctcccatctgtttttgctcattc 12750294  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 33648352 - 33648297
Alignment:
Q  38 gagaattgctcttcttccatctgtttttgctcattcgcgccgaaaaagacacatgc 93  Q
    ||||||||||||||| |||||| ||||||||||||  ||| |||||| ||||||||    
T  33648352 gagaattgctcttctaccatctatttttgctcattgccgctgaaaaatacacatgc 33648297  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 30863265 - 30863299
Alignment:
Q  39 agaattgctcttcttccatctgtttttgctcattc 73  Q
    ||||||||||||||||||| |||||||||||||||    
T  30863265 agaattgctcttcttccatttgtttttgctcattc 30863299  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 42747231 - 42747166
Alignment:
Q  38 gagaattgctcttcttccatctgtttttgctcattcgcgccgaaaaagacacatgcatgagttaac 103  Q
    ||||||||||||||| ||||||| ||||||||| |  ||| || ||| |||||||| |||||||||    
T  42747231 gagaattgctcttctcccatctggttttgctcactttcgctgagaaatacacatgcgtgagttaac 42747166  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 24393723 - 24393687
Alignment:
Q  37 ggagaattgctcttcttccatctgtttttgctcattc 73  Q
    |||||||||||||||| |||| |||||||||||||||    
T  24393723 ggagaattgctcttctcccatatgtttttgctcattc 24393687  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 36139108 - 36139072
Alignment:
Q  37 ggagaattgctcttcttccatctgtttttgctcattc 73  Q
    |||||||||||||||| |||| |||||||||||||||    
T  36139108 ggagaattgctcttctcccatatgtttttgctcattc 36139072  T

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