View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21516_low_2 (Length: 582)
Name: NF21516_low_2
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 3239070 - 3239275
Alignment:
| Q |
1 |
ttgacaattttaattttcctaaagggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaag |
100 |
Q |
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| T |
3239070 |
ttgacaattttaattttcctaaagggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaag |
3239169 |
T |
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| Q |
101 |
gtatgtttcataataacaattagttttacatttttggtataaaacaccatatgggttttgtatcatccacaaatcttatctaaagttaaatgcacatcct |
200 |
Q |
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| T |
3239170 |
gtatgtttcataataacaattagttttacatttttggtataaaacaccatatgggttttgtatcatccacaaatcttatctaa--gtaaatacacatcct |
3239267 |
T |
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| Q |
201 |
atatcgag |
208 |
Q |
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|||||||| |
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| T |
3239268 |
atatcgag |
3239275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 3243253 - 3243348
Alignment:
| Q |
40 |
tatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaaggtatgtttcataataacaattagttttacattttt |
135 |
Q |
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| T |
3243253 |
tatgtaaatcttgagttggctcttactaatcaagccaatgccttgctcacaattgtcaaaggtatgtttcatattaacaattgcttttacattttt |
3243348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 380 - 450
Target Start/End: Original strand, 3243501 - 3243571
Alignment:
| Q |
380 |
atcagaaaccgaacaggagttcaaagaaagtaattattattggagtgtcgacaagttcgtacatttggatg |
450 |
Q |
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| T |
3243501 |
atcagaaactgaacaggagctcaatgcaagtaattattgctggagtgtcgacaagttcatacatttggatg |
3243571 |
T |
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