View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21516_low_5 (Length: 449)
Name: NF21516_low_5
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Complemental strand, 12761437 - 12761006
Alignment:
| Q |
14 |
catcaaaaacctcttctacaaccttatcagaattcttctctttgcttctaacaatccacttcaaattatttccacaaacaccataatcatcaagcattcc |
113 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12761437 |
catcaaaaacctcttccacaaccttatcagaattcttctctttgcttctaacaatccacttcaaattatttccacaaacaccataatcatcaagcattcc |
12761338 |
T |
|
| Q |
114 |
gacataattaaccctagtattgaacctaatcatctctcttaacccaaaccattcacaaaaatcttttagatacataagtatttcaacatggccagggaac |
213 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12761337 |
aacataattaaccctagtattgaaccttatcatctctcttaacccaaaccattcacaaaaatcttttagatacataagtatttcaacatgtccagggaac |
12761238 |
T |
|
| Q |
214 |
ctcctcatgtctctacctttcttggtagaaaatggaaaatctgtgaaccccatgacttctcttggagactgtgttcttaaagagttatagatactgctat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12761237 |
ctcctcatgtctctacctttcttggtagaaaatggaaaatctgtgaaccccatgacttctcttggagattgtgttcttaaagagttatagatactgctat |
12761138 |
T |
|
| Q |
314 |
gaacttttagaaaagggtttctacctaaaggatcttcaccttctatatttttatcatcatataaccattgtcctccaatgtcatgattttgttctagcac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12761137 |
gaacttttagaaaagggtttctacctaaaggatcttcaccttctatatttttatcatcatataaccattgtcctccaatgtcatgattttgttctagcac |
12761038 |
T |
|
| Q |
414 |
aattactttgtgaccttcttttcttatctctc |
445 |
Q |
| |
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||||||||| |||||||||||||||||||||| |
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| T |
12761037 |
aattactttatgaccttcttttcttatctctc |
12761006 |
T |
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