View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21516_low_6 (Length: 442)
Name: NF21516_low_6
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 40966238 - 40965829
Alignment:
| Q |
16 |
aatatacaagaatttctacactagactaagtgaacaatggtccccctctattggattgccatataacttaaacatcataaactacaaaaaagattgtacc |
115 |
Q |
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| T |
40966238 |
aatatacaagaatttctacactagactaagtgaccaatggtccccctctattggattgccatataacttaaacatcataaactacaaaaaagattgtatc |
40966139 |
T |
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| Q |
116 |
tccatttcataataactta-caatgaacattatcaaactttacaaactgaagcaagaaattgaaattccaaaatcgaaaacactcatcatgtgtttcttg |
214 |
Q |
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| T |
40966138 |
tccaatatttcataacttaacaatgaacattaacaaactttacaaactgaagcaagaaattgaaattccaaaatcgaaaacactcatcatgtgtttcttg |
40966039 |
T |
|
| Q |
215 |
aatttcattctatcatgctttaaacctacagccacaagataatatgttaattaataactagccgctatatgattaagtataaccacaaaatatatagata |
314 |
Q |
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| T |
40966038 |
aatttcattctattatgctttaaacctacagccacaagataatatgctaattaataactagccactatatgattaagtataaccacaaaatatatagata |
40965939 |
T |
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| Q |
315 |
tagagaaaatgaagaaagaccttttagaaaatatttttctgtaaatcatctagaccagggtcaatatctttggcttctttcttttcatcattttccagta |
414 |
Q |
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| T |
40965938 |
tagagaaaatgaagaaagaccttttagaaaatatttttctgtaaatcatctagaccagggtcaatatctttggcttctttcttttcatcattttccagta |
40965839 |
T |
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| Q |
415 |
agataggagc |
424 |
Q |
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| T |
40965838 |
agataggagc |
40965829 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 52435322 - 52435382
Alignment:
| Q |
321 |
aaatgaagaaagaccttttagaaaatatttttctgtaaatcatctagaccagggtcaatat |
381 |
Q |
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|||||||||||||||||| ||||||| | ||| |||| ||| ||||| |||||||| |||| |
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| T |
52435322 |
aaatgaagaaagacctttcagaaaatttatttttgtacatcctctaggccagggtcgatat |
52435382 |
T |
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