View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21516_low_7 (Length: 430)
Name: NF21516_low_7
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 225 - 414
Target Start/End: Original strand, 18270381 - 18270581
Alignment:
| Q |
225 |
gttaagttcttggaaagattcttgtctcttaataatgtcaatagcca-------------acagattctttgaaaaatcaattagaataaatcacctaca |
311 |
Q |
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| T |
18270381 |
gttaagttcttgaaaagattcttgtctcttaataatgtcaatagccacctccacaagccaacaaattctttgaaaaataaattagaataaatcatctaca |
18270480 |
T |
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| Q |
312 |
tctctttacaccttttaagttttctatataaacaagtcatgaatgtaaaaatattagattgcaaatatatattgcaatatcaaaacttaaaacaagaagt |
411 |
Q |
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| T |
18270481 |
tctctt-acaccttc-aagttttctatataaacaagtcatgaatgtaaatttattacattgcaaatatatattgcaatatcaaaacttaaaacaagaagt |
18270578 |
T |
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| Q |
412 |
aga |
414 |
Q |
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||| |
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| T |
18270579 |
aga |
18270581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 18270180 - 18270303
Alignment:
| Q |
20 |
aattctaataatatggtaagaataagatagtgtgaaacaataaaaatgttactatttcttaacattttgtattcaactaaattaatgtttatattgttca |
119 |
Q |
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| T |
18270180 |
aattctaataacatggtaataataggattgtgtgaaacagtaaaaatgttactgtttcttaacattttctattcgactaaattagtgtttatattgttca |
18270279 |
T |
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| Q |
120 |
aatgaaagggtatttatatcaatg |
143 |
Q |
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| T |
18270280 |
aatgaaaggctacttatatcaatg |
18270303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 372
Target Start/End: Original strand, 34685461 - 34685565
Alignment:
| Q |
267 |
agccaacagattctttgaaaaatcaattagaataaatcacctacatctctttacaccttttaagttttctatataaacaagtcatgaatgtaaaaatatt |
366 |
Q |
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| T |
34685461 |
agccaatagattctttgagaaaacaattacaatgaactaactgcatctctttacacc-tataagttgtctatataaacaagtattgaatgcaaaattatt |
34685559 |
T |
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| Q |
367 |
agattg |
372 |
Q |
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| |||| |
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| T |
34685560 |
acattg |
34685565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 34431010 - 34430976
Alignment:
| Q |
226 |
ttaagttcttggaaagattcttgtctcttaataat |
260 |
Q |
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| T |
34431010 |
ttaagtttttggaaagattcttgtctcttaataat |
34430976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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