View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21516_low_8 (Length: 429)
Name: NF21516_low_8
Description: NF21516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21516_low_8 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 9380 - 8983
Alignment:
| Q |
10 |
ataatactcaaggctaatttatttatttttatcttaagtatcagagtgtaatttaacacatatattgatcgaatccgtaaaaatcagctactatattgat |
109 |
Q |
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| T |
9380 |
ataatactcaaggctgatttatttatttttatcttaagtat-agagtgtaatttaacacataaattgatcgaatccgtaaaaatcagctactatattgat |
9282 |
T |
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| Q |
110 |
caacttgtctgaatggacaagttggccatatattagatatatacaacattaagcaaaaatagctccagatgactaaatataatgttgagcatccaacaag |
209 |
Q |
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| T |
9281 |
caacttgtctgaatggacaagttggccatatattagttatatacaacattaagcaaaaatagctccagatgactaaatataatgttgagcattcaagaag |
9182 |
T |
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| Q |
210 |
ataatatgtacagcgtgttggtggtaacttggaatttggcgtcatagacacaaatcttcttcaaaatagtctacttcaactttgaacatgccagcaaagc |
309 |
Q |
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| T |
9181 |
ataatatgtacagcgtgttggtggtaacttggaatttggcgtcatagacacaaatcttcttcaaaatagtctacttcaactttgaacatgctagcaaagc |
9082 |
T |
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| Q |
310 |
tacgactctatgagcaacacagagtttgatatttctaaaatgttgaatctgtaaaacaatttcctttgttactccttaatcaaatcatagggtatgtat |
408 |
Q |
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| T |
9081 |
tatgactctatgagcaacacagagtttgatatttctaaaatgttgaatctgtaaaacaatttcctttgttactccttaatcaaatcatagggtatgtat |
8983 |
T |
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