View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21517_high_12 (Length: 238)

Name: NF21517_high_12
Description: NF21517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21517_high_12
NF21517_high_12
[»] chr3 (33 HSPs)
chr3 (10-194)||(44230662-44230846)
chr3 (12-194)||(20351565-20351747)
chr3 (10-194)||(20916945-20917129)
chr3 (10-194)||(20925907-20926091)
chr3 (10-194)||(41613294-41613478)
chr3 (10-194)||(49195394-49195578)
chr3 (10-194)||(42757112-42757295)
chr3 (14-194)||(48563891-48564071)
chr3 (10-194)||(17567024-17567208)
chr3 (64-194)||(49268251-49268381)
chr3 (10-113)||(47073132-47073235)
chr3 (30-114)||(48889740-48889824)
chr3 (30-113)||(16612109-16612192)
chr3 (30-113)||(22047061-22047144)
chr3 (30-114)||(30254948-30255032)
chr3 (38-113)||(52390342-52390417)
chr3 (30-113)||(4007294-4007378)
chr3 (38-113)||(3976751-3976826)
chr3 (32-109)||(50997045-50997122)
chr3 (30-113)||(597927-598010)
chr3 (30-113)||(29009921-29010004)
chr3 (38-111)||(46390014-46390087)
chr3 (53-162)||(8731753-8731858)
chr3 (53-162)||(9083640-9083745)
chr3 (38-113)||(34046437-34046512)
chr3 (38-113)||(42903126-42903201)
chr3 (38-113)||(49143399-49143474)
chr3 (38-113)||(50479743-50479818)
chr3 (38-113)||(54387185-54387260)
chr3 (38-111)||(50215892-50215963)
chr3 (26-113)||(2273865-2273952)
chr3 (38-113)||(36128642-36128716)
chr3 (38-113)||(46700962-46701037)
[»] chr7 (24 HSPs)
chr7 (10-194)||(47777211-47777395)
chr7 (10-194)||(16677989-16678172)
chr7 (10-194)||(17652225-17652408)
chr7 (26-194)||(27452563-27452731)
chr7 (10-191)||(37341268-37341449)
chr7 (10-194)||(39461418-39461603)
chr7 (26-194)||(19798233-19798401)
chr7 (14-130)||(11635784-11635900)
chr7 (12-135)||(11635583-11635706)
chr7 (10-194)||(5540509-5540687)
chr7 (30-113)||(46739459-46739542)
chr7 (30-114)||(47672067-47672151)
chr7 (32-114)||(9493752-9493834)
chr7 (26-111)||(17836123-17836208)
chr7 (30-113)||(15073213-15073296)
chr7 (30-113)||(42507022-42507105)
chr7 (10-111)||(34739410-34739511)
chr7 (30-114)||(36978622-36978706)
chr7 (38-113)||(17462241-17462316)
chr7 (38-113)||(17590898-17590973)
chr7 (38-113)||(9370326-9370401)
chr7 (38-113)||(35609362-35609437)
chr7 (38-113)||(41881552-41881627)
chr7 (38-113)||(48404419-48404494)
[»] chr4 (28 HSPs)
chr4 (10-194)||(50194416-50194600)
chr4 (10-194)||(50022543-50022727)
chr4 (10-194)||(51684162-51684346)
chr4 (10-191)||(30704964-30705145)
chr4 (30-159)||(46437182-46437313)
chr4 (10-162)||(50902448-50902600)
chr4 (10-133)||(55406344-55406467)
chr4 (38-113)||(44679011-44679086)
chr4 (12-111)||(50275762-50275861)
chr4 (30-113)||(30725737-30725820)
chr4 (82-159)||(10752443-10752520)
chr4 (82-159)||(10966212-10966289)
chr4 (38-113)||(1308107-1308182)
chr4 (30-113)||(21021834-21021917)
chr4 (30-113)||(37021024-37021106)
chr4 (30-113)||(41797923-41798006)
chr4 (38-113)||(6180726-6180801)
chr4 (38-113)||(31422750-31422825)
chr4 (87-158)||(41932652-41932723)
chr4 (38-113)||(49091482-49091557)
chr4 (38-113)||(49166077-49166152)
chr4 (60-162)||(21537463-21537562)
chr4 (57-162)||(11083002-11083104)
chr4 (38-109)||(40357234-40357305)
chr4 (73-115)||(11049559-11049601)
chr4 (80-108)||(4719546-4719574)
chr4 (23-51)||(14316429-14316457)
chr4 (138-194)||(55406844-55406900)
[»] chr1 (22 HSPs)
chr1 (11-194)||(50342921-50343104)
chr1 (10-192)||(45825839-45826020)
chr1 (10-194)||(47503245-47503432)
chr1 (10-194)||(21141815-21142002)
chr1 (10-191)||(47656809-47656990)
chr1 (30-190)||(52803097-52803257)
chr1 (10-191)||(38126434-38126615)
chr1 (10-194)||(23275072-23275235)
chr1 (30-114)||(51321748-51321832)
chr1 (30-113)||(96885-96968)
chr1 (30-113)||(22525245-22525328)
chr1 (27-114)||(49856911-49856998)
chr1 (38-111)||(19524146-19524219)
chr1 (30-113)||(13638949-13639032)
chr1 (30-113)||(19157061-19157144)
chr1 (38-113)||(26876704-26876779)
chr1 (40-114)||(35257845-35257919)
chr1 (30-110)||(2366158-2366238)
chr1 (38-114)||(3731317-3731393)
chr1 (38-113)||(30891026-30891101)
chr1 (30-113)||(31782678-31782755)
chr1 (74-113)||(2424216-2424255)
[»] chr8 (26 HSPs)
chr8 (10-194)||(5303168-5303352)
chr8 (10-193)||(39845923-39846109)
chr8 (10-191)||(35552606-35552787)
chr8 (10-194)||(43189008-43189192)
chr8 (10-194)||(40076185-40076369)
chr8 (10-194)||(34821944-34822128)
chr8 (14-162)||(37327812-37327958)
chr8 (87-189)||(45128683-45128785)
chr8 (30-113)||(34369498-34369581)
chr8 (30-113)||(34370826-34370909)
chr8 (26-113)||(41249067-41249154)
chr8 (26-112)||(39938160-39938246)
chr8 (10-113)||(39253044-39253147)
chr8 (38-113)||(39602632-39602707)
chr8 (26-113)||(43212550-43212637)
chr8 (30-159)||(2985103-2985228)
chr8 (23-168)||(5678020-5678159)
chr8 (118-193)||(20858224-20858299)
chr8 (30-112)||(45065237-45065319)
chr8 (30-111)||(15035673-15035754)
chr8 (38-113)||(24474-24549)
chr8 (38-113)||(488655-488730)
chr8 (38-113)||(1053586-1053661)
chr8 (38-113)||(23021257-23021332)
chr8 (38-113)||(26660508-26660583)
chr8 (38-113)||(42484536-42484611)
[»] chr5 (17 HSPs)
chr5 (26-194)||(5197900-5198068)
chr5 (10-160)||(40623849-40623999)
chr5 (95-194)||(42538109-42538208)
chr5 (26-155)||(8701177-8701306)
chr5 (10-114)||(42941412-42941516)
chr5 (30-113)||(7758350-7758433)
chr5 (33-114)||(19227895-19227976)
chr5 (30-110)||(38969128-38969208)
chr5 (30-113)||(19040045-19040128)
chr5 (30-113)||(30706147-30706230)
chr5 (38-113)||(28240776-28240851)
chr5 (30-113)||(13760-13843)
chr5 (30-113)||(8579451-8579534)
chr5 (30-113)||(27672597-27672680)
chr5 (30-113)||(28877685-28877768)
chr5 (30-95)||(27972252-27972317)
chr5 (54-115)||(20422828-20422889)
[»] chr6 (8 HSPs)
chr6 (10-195)||(6319492-6319677)
chr6 (10-191)||(24722833-24723014)
chr6 (27-111)||(24087695-24087779)
chr6 (30-113)||(27617777-27617860)
chr6 (38-113)||(6202210-6202285)
chr6 (38-113)||(11689177-11689252)
chr6 (38-113)||(22302242-22302317)
chr6 (38-113)||(30828588-30828663)
[»] chr2 (14 HSPs)
chr2 (11-194)||(36655320-36655503)
chr2 (30-190)||(39948565-39948725)
chr2 (26-113)||(29400508-29400595)
chr2 (30-113)||(10827966-10828049)
chr2 (38-109)||(7187817-7187888)
chr2 (30-113)||(17421573-17421656)
chr2 (38-113)||(3939676-3939751)
chr2 (38-113)||(15832179-15832254)
chr2 (38-113)||(43979581-43979656)
chr2 (38-113)||(45429635-45429710)
chr2 (38-113)||(5353016-5353091)
chr2 (38-113)||(20931620-20931695)
chr2 (38-113)||(30495883-30495958)
chr2 (38-113)||(43538674-43538749)
[»] scaffold0238 (1 HSPs)
scaffold0238 (10-194)||(17884-18068)
[»] scaffold0180 (1 HSPs)
scaffold0180 (72-113)||(14609-14650)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 44230846 - 44230662
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44230846 catcatcatatgctatatgttgctactctggtatatgatcttggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 44230747  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||    
T  44230746 cacctgctggctcggatcaaccacatgcgactcttcaggctgtgtagcctgagaatcctcctacgaactccctgaaccatccacc 44230662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 20351747 - 20351565
Alignment:
Q  12 tcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcca 111  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  20351747 tcatcatctgctatatgttgctgctttggtatatgatcctagtcatacccaccatccgtaacatcatggtgtacctgatcctgataattcaggtactcca 20351648  T
Q  112 cctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||    
T  20351647 cctgctggcttggatcaaccacctgcgactcttcaggctgtgtagcctgagaagcttcctgcgaactccctgaaccatccacc 20351565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 20916945 - 20917129
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  20916945 catcatcatctgctatatgttgctgctctggtatatgattctggtcatacccaccatccgtaacatcatggtgtacctgatcctgataattcaggtactc 20917044  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||| |||||||||||||||||| |||||||||||||| | ||||||||||| |||||| |||||| |||||||||||||||||    
T  20917045 cacctcctggctcggatcaaccacctgcgactcttcaggttgtgtagcctgagaagcctcatgcgaagtccctgaaccatccacc 20917129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 20925907 - 20926091
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  20925907 catcatcatctgctatatgttgctgctctggtatatgattctggtcatacccaccatccgtaacatcatggtgtacctgatcctgataattcaggtactc 20926006  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||| |||||||||||||||||| |||||||||||||| | ||||||||||| |||||| |||||| |||||||||||||||||    
T  20926007 cacctcctggctcggatcaaccacctgcgactcttcaggttgtgtagcctgagaagcctcatgcgaagtccctgaaccatccacc 20926091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 41613478 - 41613294
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| | ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  41613478 catcatcatctcctacatgttgctgctctggtatatgatcctggtcatacccaccatcagtaacatcgtggtgtacatgatcctgataattcaggtactc 41613379  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
     ||||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||    
T  41613378 tacctgttggctcggatcaaccacctgcgactcttcaggctgtgtagcctgagaagcctcctgcgaactccctgaactatccacc 41613294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 49195394 - 49195578
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| ||||||||| |||| |||| |||||||||||| |||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  49195394 catcatcatctgctatatgctgctcctctagtatatgatcctggtcatatccaccatcggtcacatcgtggtgtacctgatcctgataattcaggtactc 49195493  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  49195494 cacctgctggctcggatcaaccacctgcgactcttcaggctgtgtagcccgagaagcctcctgcgaactccctgaaccatccacc 49195578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 42757295 - 42757112
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| ||||||||| |||||||||||||||| ||||| |||||||| |||||| || ||| ||||||||| ||||| ||||||||||||| ||||    
T  42757295 catcatcatctgctatatgctgctgctctggtatataatcctggtcataccaaccatcagtcacaacgtggtgtacctgattctgataattcagg-actc 42757197  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    | ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  42757196 cgcctcctggctcggatcaaccacctgcgactcttcaggctctgtagcctgagcagcctcctgcgaagtccctgaaccatccacc 42757112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 48564071 - 48563891
Alignment:
Q  14 atcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||| ||||||||| |||||||||||||||||||||| |||||||||| |||| || ||||||||||||  ||||||||||||||||||||||||||||    
T  48564071 atcatctgctatatgctgctgctctggtatatgatcctggtcatacccatcatcggtcacatcgtggtgttcctgatcctgataattcaggtactccacc 48563972  T
Q  114 tgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    | ||||||| |||||||||| |||||||||||||| | ||||||||||| |||||||||| |||||| |||||||||||||    
T  48563971 tactggctcagatcaaccacctgcgactcttcaggttgtgtagcctgagaagcctcctgcaaactccttgaaccatccacc 48563891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 17567024 - 17567208
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| | ||| |||||| || | |||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  17567024 catcatcatcttctacatgttgttgttgtggtatatgatcctggtcatacccaccatctgtaacatcgtggtgtacctgatcctgataattcaggtactc 17567123  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||||||||||||| ||||| || |  ||||||| ||||| ||||   |||| |||||||||||||||||||||||||||||||    
T  17567124 cacctgctggctcgggtcaactacctatgactctttaggctgtgtaatatgagaagcctcctgcgaactccctgaaccatccacc 17567208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 49268251 - 49268381
Alignment:
Q  64 catccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagc 163  Q
    |||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| || |||||||||||     
T  49268251 catccgtaacatcgtggtgtacttgatgctgataattcaggtactccacctgctggctcgggtcaaccacctgcgactcttcagactgtgtagcctgaga 49268350  T
Q  164 agcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||||||||||||||||||||||||||    
T  49268351 agcctcctgcgaactccctgaaccatccacc 49268381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 47073132 - 47073235
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||| | ||||| ||||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  47073132 catcatcgtctgctacatgttgctgctgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 47073231  T
Q  110 cacc 113  Q
    ||||    
T  47073232 cacc 47073235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 48889824 - 48889740
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacct 114  Q
    |||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||    
T  48889824 tgctgctctggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacct 48889740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 16612192 - 16612109
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  16612192 tgctgctatggtatatgatcctagtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacc 16612109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 22047061 - 22047144
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  22047061 tgctgctatggtatatgatcctagtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacc 22047144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 30254948 - 30255032
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacct 114  Q
    |||||||||||||||||||| |  |||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||    
T  30254948 tgctgctctggtatatgatcatgatcatacccaccatcggtcacatcgtggtgtacctgatcctgataattcaggtactccacct 30255032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 52390342 - 52390417
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  52390342 tggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacc 52390417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 4007294 - 4007378
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtat-ctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| |||||||| || |||||||||||||| ||||||||||||||||||||||||||||    
T  4007294 tgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcgtggtgtatcctgatcctgataattcaggtactccacc 4007378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 3976826 - 3976751
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  3976826 tggtatatgatcctggtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacc 3976751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 50997122 - 50997045
Alignment:
Q  32 ctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||| |||||||||||||| |||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  50997122 ctgctgtggtatatgatccttgtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 50997045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 598010 - 597927
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| ||||||||||||||| ||   ||||||||||| |||||||||||| |||||||||||||||    
T  598010 tgctgctgtggtatatgatcctggtcatacccaccatcagtcgtatcgtggtgtacctgatcctgatagttcaggtactccacc 597927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 29010004 - 29009921
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||| ||||| |||||||||||||||    
T  29010004 tgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgttgtacctgatcttgatagttcaggtactccacc 29009921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 46390087 - 46390014
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcca 111  Q
    |||||||||||||| |||||| ||||| ||||| |||||||| |||| |||||||||||| |||||||||||||    
T  46390087 tggtatatgatcctggtcatatccaccgtccgtcacatcgtgatgtacctgatcctgatagttcaggtactcca 46390014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 8731753 - 8731858
Alignment:
Q  53 gtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctggctcggatcaaccacatgcgactcttcaggctat 152  Q
    |||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||| ||   |||| || |||||||||| ||||| | |||||| | |    
T  8731753 gtcataaccaccatcagtggcatcgtggtgtatctgatcctgataattcaggtactcgac---ctgggtcagatcaaccacctgcgattgttcagg-tgt 8731848  T
Q  153 gtagcctgag 162  Q
    ||||||||||    
T  8731849 gtagcctgag 8731858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 9083640 - 9083745
Alignment:
Q  53 gtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctggctcggatcaaccacatgcgactcttcaggctat 152  Q
    |||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||| ||   |||| || |||||||||| ||||| | |||||| | |    
T  9083640 gtcataaccaccatcagtggcatcgtggtgtatctgatcctgataattcaggtactcgac---ctgggtcagatcaaccacctgcgattgttcagg-tgt 9083735  T
Q  153 gtagcctgag 162  Q
    ||||||||||    
T  9083736 gtagcctgag 9083745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 34046512 - 34046437
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  34046512 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 34046437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 42903126 - 42903201
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  42903126 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 42903201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 49143399 - 49143474
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  49143399 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 49143474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 50479743 - 50479818
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  50479743 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 50479818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 54387260 - 54387185
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  54387260 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 54387185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 50215892 - 50215963
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcca 111  Q
    |||||||||||||| ||||||||||||||| || |||| |||||||| |||  |||||||||||||||||||||    
T  50215892 tggtatatgatcctggtcatacccaccatcagtcacattgtggtgtacctg--cctgataattcaggtactcca 50215963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 2273865 - 2273952
Alignment:
Q  26 atgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||| || ||||||||| ||||  ||||| |||||||| || ||||| || |||| |||||||||||| |||||||||||||||    
T  2273865 atgttgcttctgtggtatatgttcctgttcatatccaccatcagtcacatcatgttgtacctgatcctgatagttcaggtactccacc 2273952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 36128716 - 36128642
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| || || |||| ||||||||  |||||||||||||||||||||||||||    
T  36128716 tggtatatgatcctggtcatatccacc-tcagtcacattgtggtgtacttgatcctgataattcaggtactccacc 36128642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 46700962 - 46701037
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||  || || ||||| || ||||  ||||||||||| |||||||||||||||    
T  46700962 tggtatatgatcctggtcatatccactgtctgtcacatcatgatgtacatgatcctgatagttcaggtactccacc 46701037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 47777395 - 47777211
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| ||||||||| | ||||| ||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47777395 catcatcatctgctatatgctactgctgtggcatatgatcctggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 47777296  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47777295 cacctgctggctcgggtcaaccacctgcgactcttcaggctgtgtagcctgagcagcctcctgcgaactccctgaaccatccacc 47777211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 16678172 - 16677989
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  16678172 catcatcatctgctatatgttgctcctctggtatatgatcctggtcatacccaccatctgtaacattgtggtgtacctgatcctgataattcaggtactc 16678073  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||||||||||||||||||| |||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||    
T  16678072 cacctgctggctcggatcaaccacctgcgactcttca-gttgtgtagcctgagaagcctcctgcgaactccctgaaccatccacc 16677989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 17652408 - 17652225
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  17652408 catcatcatctgctatatgttgctcctctggtatatgatcctggtcatacccaccatctgtaacattgtggtgtacctgatcctgataattcaggtactc 17652309  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||||||||||||||||||| |||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||    
T  17652308 cacctgctggctcggatcaaccacctgcgactcttca-gttgtgtagcctgagaagcctcctgcgaactccctgaaccatccacc 17652225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 27452563 - 27452731
Alignment:
Q  26 atgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctggctcgga 125  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |     
T  27452563 atgttgctgctgtggtatatgatcctggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtgctccacctgctggctcagg 27452662  T
Q  126 tcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  27452663 tcaaccacgtgcgactcttcaggctgtgtagcctgagaagcctcctgcgaactccctgaaccatccacc 27452731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 37341449 - 37341268
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  37341449 catcatcatatgctatatgctgctactctggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 37341350  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatcc 191  Q
    ||||| |||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  37341349 cacctcctggctcggatcaaccacctgcgactctttaggctgtgtagcctgagaagcctcctgcgaagtccctgaaccatcc 37341268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 39461603 - 39461418
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcataccc-accatccgtaacatcgtggtgtatctgatcctgataattcaggtact 108  Q
    ||||||||| |||||||||||| || |||||||||||||||| ||||||||| ||||| |||||||||||||||||  ||||||||||||||||||||||    
T  39461603 catcatcatctgctatatgttgttgatctggtatatgatcctggtcataccccaccattcgtaacatcgtggtgtacttgatcctgataattcaggtact 39461504  T
Q  109 ccacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||||||||| |||||||||| || | |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  39461503 ccacctgctggctcagatcaaccacctggggctcttcaggctatgtagcctgagcagcctcatgcgaactccctgaacaatccacc 39461418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 19798401 - 19798233
Alignment:
Q  26 atgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctggctcgga 125  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  19798401 atgttgctgctctagtatatgatcctggtcatacccatcatccgtaacatcgtggtgtacttgatcctgataatccaggtactgcacctgctggctcgga 19798302  T
Q  126 tcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  19798301 tcaaccacctgcgactcttcaggctgtgtagcctgagaagcctccttcgaactccctgaaccatccacc 19798233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 11635900 - 11635784
Alignment:
Q  14 atcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||| |||||||||||||| |||| ||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11635900 atcatctgctatatgttgctactctagtatatgatgctggtcatatccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactccacc 11635801  T
Q  114 tgctggctcggatcaac 130  Q
    |||||||||||||||||    
T  11635800 tgctggctcggatcaac 11635784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 11635583 - 11635706
Alignment:
Q  12 tcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcca 111  Q
    ||||||| |||||||||||||| ||||||||||||||| | ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||    
T  11635583 tcatcatctgctatatgttgctactctggtatatgatcttggtcatacccaccatcggttacatcgtggtgtacctgatcctgataattcaggtactcca 11635682  T
Q  112 cctgctggctcggatcaaccacat 135  Q
    ||||||| ||| ||||||||||||    
T  11635683 cctgctgactcagatcaaccacat 11635706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 5540509 - 5540687
Alignment:
Q  10 catcatcatttgctatatgttgctgctct---ggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggta 106  Q
    ||||||||| |||||||||||| |||| |   ||||||| || || |||||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  5540509 catcatcatctgctatatgttgttgctgttgtggtatatcattctggtcatacccaccctccgtaacatcgtggtgtacttgatcctgataattcaggta 5540608  T
Q  107 ctccacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||||||  ||||||||||||||||| || |||||||||||         ||||||||||||||| |||||||||||||||||||||    
T  5540609 ctccacctattggctcggatcaaccacctgtgactcttcagg---------ctgagcagcctcctgtgaactccctgaaccatccacc 5540687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 46739459 - 46739542
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  46739459 tgctgctgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacc 46739542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 47672067 - 47672151
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacct 114  Q
    ||||||| ||||||||||| || ||||||||||||||| || ||||||||||||| |||||||||||||||| ||||||||||||    
T  47672067 tgctgctttggtatatgattctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattctggtactccacct 47672151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 9493752 - 9493834
Alignment:
Q  32 ctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacct 114  Q
    |||||||||||||||||||| |||||| |||||||| || |||| ||| |||| |||||||||||||||||||||||||||||    
T  9493752 ctgctctggtatatgatcctggtcatatccaccatcagtcacattgtgctgtacctgatcctgataattcaggtactccacct 9493834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 17836208 - 17836123
Alignment:
Q  26 atgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcca 111  Q
    ||||||||| | |||||||||||||| |||||| |||||||| || ||||||||||||| ||||||||||||||||| ||||||||    
T  17836208 atgttgctgttgtggtatatgatcctggtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcatgtactcca 17836123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 15073213 - 15073296
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  15073213 tgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactccacc 15073296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 42507022 - 42507105
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  42507022 tgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactccacc 42507105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 34739511 - 34739410
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| | ||| ||| ||||| | |||||| ||||||| ||||||||||||||| || ||||||||||||| |||||||||||| || ||||||||    
T  34739511 catcatcatctcctacatgctgctgttgtggtatgtgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgatattttaggtactc 34739412  T
Q  110 ca 111  Q
    ||    
T  34739411 ca 34739410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 36978706 - 36978622
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacct 114  Q
    |||| ||||| ||||||||| | |||||||||||||||  | ||||||||||||| || ||||||||||||||||||||||||||    
T  36978706 tgcttctctgatatatgatcttggtcatacccaccatcaatcacatcgtggtgtacctaatcctgataattcaggtactccacct 36978622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 17462241 - 17462316
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  17462241 tggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactccacc 17462316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 17590973 - 17590898
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  17590973 tggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactccacc 17590898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 9370326 - 9370401
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  9370326 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 9370401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 35609362 - 35609437
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  35609362 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 35609437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 41881627 - 41881552
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  41881627 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 41881552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 48404494 - 48404419
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  48404494 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 48404419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 50194600 - 50194416
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| | ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||    
T  50194600 catcatcatctcctacatgttgctgctctggtatatgatcttagtcatacccaccatccgtaacatcgtagtgtacttgatcctgataattcaggtactc 50194501  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  50194500 cacctgctggctcggatcaaccacctgcgactcttcaggctgtgtagcctgagaagcctcctgcgaactccctgaaccatccacc 50194416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 50022543 - 50022727
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  50022543 catcatcatctgctatatgctgctgctctggtatatgatcctggtcatactcaccatccataacatcgtggtgtacctgatcctgataattcaggtactc 50022642  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||||||||||||||||||| ||||||||||| |||| |||||| |||| |||||||||||||||||||||||||||||||    
T  50022643 cacctgctggctcggatcaaccacctgcgactcttcgggctgtgtagcttgagaagcctcctgcgaactccctgaaccatccacc 50022727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 51684346 - 51684162
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| |  ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  51684346 catcatcatctattatatgttgctgctctggtatatgatcctggtcatactcaccatccgtaacatcgtggtgtacctgatcctgataatttaggtactc 51684247  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  51684246 cacctgctggctcggatcaaccacctgcgactctttaggctgtgtagcctgagaagcctcctacgaactccctgaaccatccacc 51684162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 30705145 - 30704964
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||  ||| |||||||| |||||||| |||||||||||||||    
T  30705145 catcatcatctgctatatgttgctgctctggtatatgatcctggtcatacccaccatcagtcccattgtggtgtacctgatcctaataattcaggtactc 30705046  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatcc 191  Q
    ||||| |||||||||||||||||| ||||||| |||||||| ||||||||||  ||||||||||||| ||||||||||||||    
T  30705045 cacctcctggctcggatcaaccacctgcgacttttcaggctgtgtagcctgataagcctcctgcgaagtccctgaaccatcc 30704964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 46437313 - 46437182
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctgg--ctcggatc 127  Q
    |||||||||||||||||||||| ||||||||||||||| || || |||||||||| ||||||||||||||||||||||||||||| ||||  ||||| |     
T  46437313 tgctgctctggtatatgatcctggtcatacccaccatcagtcacttcgtggtgtacctgatcctgataattcaggtactccaccttctgggtctcgggtt 46437214  T
Q  128 aaccacatgcgactcttcaggctatgtagcct 159  Q
    |||||| |||||||||||||||||||||||||    
T  46437213 aaccacttgcgactcttcaggctatgtagcct 46437182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 50902600 - 50902448
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| | ||||||| ||||| | |||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  50902600 catcatcatctcctatatgctgctgttgtggtatatgatcctggtcatacccaccatctgtaacatcgtggtgtacctgatcctgataattcaggtactc 50902501  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgag 162  Q
    |||||  |||  ||| ||||| || || ||||||||||||| |||| ||||||    
T  50902500 cacctagtgggacgggtcaacaacttgtgactcttcaggctgtgtatcctgag 50902448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 55406344 - 55406467
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| ||||||||| |||||||||||||||||||| | ||||||| |||| || |||||||||||||||| |||||||| |||||||||||||||    
T  55406344 catcatcatctgctatatgatgctgctctggtatatgatcgtggtcatactcaccgtcagtaacatcgtggtgtacctgatcctaataattcaggtactc 55406443  T
Q  110 cacctgctggctcggatcaaccac 133  Q
     ||||  ||||||| |||||||||    
T  55406444 tacctcttggctcgaatcaaccac 55406467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 44679011 - 44679086
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  44679011 tggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacc 44679086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 50275861 - 50275762
Alignment:
Q  12 tcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcca 111  Q
    ||||||| | ||| ||| ||||||| |||||||||||||| |||||||| |||||| || ||||||||||||| ||||||||||||||||||| ||||||    
T  50275861 tcatcatctcctacatgctgctgctgtggtatatgatcctggtcatacctaccatcagtcacatcgtggtgtacctgatcctgataattcaggcactcca 50275762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 30725737 - 30725820
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  30725737 tgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactccacc 30725820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 10752443 - 10752520
Alignment:
Q  82 gtatctgatcctgataattcaggtactccacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcct 159  Q
    |||| |||||||||||||||||||||||||||| ||||||||| |||||||| || |||| |||||||| ||||||||    
T  10752443 gtatatgatcctgataattcaggtactccacctactggctcgggtcaaccacctgtgactgttcaggctgtgtagcct 10752520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 10966212 - 10966289
Alignment:
Q  82 gtatctgatcctgataattcaggtactccacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcct 159  Q
    |||| |||||||||||||||||||||||||||| ||||||||| |||||||| || |||| |||||||| ||||||||    
T  10966212 gtatatgatcctgataattcaggtactccacctactggctcgggtcaaccacctgtgactgttcaggctgtgtagcct 10966289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 1308107 - 1308182
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  1308107 tggtatatgatcctggtcatatccaccatccgtcacatcatgttgtacctgatcctgatagttcaggtactccacc 1308182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 21021834 - 21021917
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| |||||||| || ||||| || |||| |||||||||||| |||||||||||||||    
T  21021834 tgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcatgatgtacctgatcctgatagttcaggtactccacc 21021917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 37021024 - 37021106
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||| ||||| |||||||||| |||| || || ||||||||||||||||| |||||||||||||||||||||    
T  37021024 tgctgctgtggtatattatcctggtcatacccatcatcagtcac-tcgtggtgtatctgatcttgataattcaggtactccacc 37021106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 41797923 - 41798006
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||| |  |||| |||||||||||| |||||||||||||||    
T  41797923 tgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcataatgtacctgatcctgatagttcaggtactccacc 41798006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 6180726 - 6180801
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  6180726 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 6180801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 31422825 - 31422750
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  31422825 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 31422750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 158
Target Start/End: Original strand, 41932652 - 41932723
Alignment:
Q  87 tgatcctgataattcaggtactccacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcc 158  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||||| ||||| | |||| |||||||||||    
T  41932652 tgatcctgataattcaggtagtccacctcctggctcgggtcaaccacctgcgattattcaagctatgtagcc 41932723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 49091557 - 49091482
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  49091557 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 49091482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 49166152 - 49166077
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||| | |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  49166152 tggtatatgatcatggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 49166077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 21537463 - 21537562
Alignment:
Q  60 ccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcct 159  Q
    |||||||| || ||||||||||||| ||||||||||||||| ||||||||||    || | |||| |||||||| || ||||||||||| | ||||||||    
T  21537463 ccaccatcagtgacatcgtggtgtacctgatcctgataatttaggtactcca---actaggtcgggtcaaccacgtgtgactcttcaggttgtgtagcct 21537559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 11083002 - 11083104
Alignment:
Q  57 tacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctggctcggatcaaccacatgcgactcttcaggctatgtag 156  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||||| ||| |||   |||| |||| |||| ||| || ||||| ||||| | |||||    
T  11083002 tacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggcactacac---ctgggtcgggtcaagcacctgtgactcatcaggttgtgtag 11083098  T
Q  157 cctgag 162  Q
    ||||||    
T  11083099 cctgag 11083104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 40357234 - 40357305
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    |||||||||||||| |||||| ||||||||||| ||||| |  |||| |||||||||||| |||||||||||    
T  40357234 tggtatatgatcctggtcatatccaccatccgtcacatcatactgtacctgatcctgatagttcaggtactc 40357305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 11049559 - 11049601
Alignment:
Q  73 catcgtggtgtatctgatcctgataattcaggtactccacctg 115  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  11049559 catcatggtgtacctgatcctgataattcaggtactccacctg 11049601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 4719546 - 4719574
Alignment:
Q  80 gtgtatctgatcctgataattcaggtact 108  Q
    |||||||||||||||||||||||||||||    
T  4719546 gtgtatctgatcctgataattcaggtact 4719574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 14316457 - 14316429
Alignment:
Q  23 tatatgttgctgctctggtatatgatcct 51  Q
    |||||||||||||||||||||||||||||    
T  14316457 tatatgttgctgctctggtatatgatcct 14316429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 55406844 - 55406900
Alignment:
Q  138 gactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||||||||| | |||||| |||  |||||||| |||| |||||||||||||||||    
T  55406844 gactcttcaggttgtgtagcatgataagcctcctccgaagtccctgaaccatccacc 55406900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 50342921 - 50343104
Alignment:
Q  11 atcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcc 110  Q
    |||||||| | ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  50342921 atcatcatctcctacatgctgctgctctggtatatgatcctggtcatacccaccatccgtaacatcgtggtgtacctggtcctgataattcaggtactcc 50343020  T
Q  111 acctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    | ||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  50343021 atctgctggctcggatcaaccacctgcgactcttcaggctgtgtagcctgagaagcctcctgcgaactccctgaaccatccacc 50343104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 45826020 - 45825839
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| |  |||||||||||||| |||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45826020 catcatcatctattatatgttgctgctttggtatatgatcctggtcatatc-accatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 45825922  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatcca 192  Q
    ||||| ||||||||||||||||||||||||||||| ||| | ||||||||||| | ||||||||||| |||||||||||||||    
T  45825921 cacctcctggctcggatcaaccacatgcgactcttaaggttgtgtagcctgagaaacctcctgcgaagtccctgaaccatcca 45825839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 47503432 - 47503245
Alignment:
Q  10 catcatcatttgctatatgttgctgctc---tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggta 106  Q
    ||||||||| ||||||||| ||||| |    |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  47503432 catcatcatctgctatatgatgctgttgatgtggtatatgatcctggtcatacccaccatctgtaacatcgtggtgtacctgatcctgataattcaggta 47503333  T
Q  107 ctccacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||||||||||||| |||||||| |||||||||||| ||| |  |||||||| |||||||||||||||||||||||||||||||    
T  47503332 ctccacctgctggctcgggtcaaccacctgcgactcttcatgctgttgagcctgagaagcctcctgcgaactccctgaaccatccacc 47503245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 21142002 - 21141815
Alignment:
Q  10 catcatcatttgctatatgttgctgctct---ggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggta 106  Q
    ||||||||| |||||||| |||||||| |   ||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||||||    
T  21142002 catcatcatctgctatattttgctgctgttgtggtatatgatcctggtcatacccaccatctgtaacatcgtggtgtacccgatcctgataattcaggta 21141903  T
Q  107 ctccacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||||||| |||||||||| |||||| |||||||||||||| | |||||| |||| ||||||||| |||||||||||||||||||||    
T  21141902 ctccacctgatggctcggattaaccacctgcgactcttcaggttgtgtagcatgagaagcctcctgtgaactccctgaaccatccacc 21141815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 47656990 - 47656809
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||| | |||||||||||| ||||||||||||||||| | ||||||||||||||| || ||||||||||||| ||||||||||||||||| ||||||    
T  47656990 catcatcgtctgctatatgttgttgctctggtatatgatcatggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaagtactc 47656891  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatcc 191  Q
    |||||  ||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||| |||||||| |||||    
T  47656890 cacctcttggctcggatcaaccacctgcgactcttcaggctgtgtagtctgagaagcctcctgcgaagtccctgaatcatcc 47656809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 52803257 - 52803097
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctggctcggatcaa 129  Q
    ||||||| |||||||||||||| |||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||    
T  52803257 tgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactcctcctgctggctcgggtcaa 52803158  T
Q  130 ccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatc 190  Q
    ||||||||||||||||||||| |||||| |||| |||||| ||||||||||||||||||||    
T  52803157 ccacatgcgactcttcaggctgtgtagcttgagaagcctcatgcgaactccctgaaccatc 52803097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 38126434 - 38126615
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||| |||||||| |||||||||||||||    
T  38126434 catcatcatctactatatgttgctgctctggtatatgatcctggtcatacccaccatcagtcacatcgttgtgtacctgatcctaataattcaggtactc 38126533  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatcc 191  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||  |||  | |||||| |||| ||||||||||||||    
T  38126534 cacctcctggctcggatcaaccacctgcgactcttcaggctgtgtagtatgaaaatcctcctacgaagtccctgaaccatcc 38126615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 23275072 - 23275235
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||| | ||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23275072 catcatcgtctgctatatgctgctgctctggtatatgatcctgatcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 23275171  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||                     |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  23275172 cacc---------------------tgcgactcttcaggctgtgtagcctgagaagcctcctgcgaactccctgaaccatccacc 23275235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 51321832 - 51321748
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacct 114  Q
    |||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||    
T  51321832 tgctgctctggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacct 51321748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 96885 - 96968
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  96885 tgctgctgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacc 96968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 22525328 - 22525245
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| ||||||||||||||| ||  |||||||||||| |||||||||||| |||||||||||||||    
T  22525328 tgctgctgtggtatatgatcctggtcatacccaccatcagtcccatcgtggtgtacctgatcctgatagttcaggtactccacc 22525245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 49856911 - 49856998
Alignment:
Q  27 tgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacct 114  Q
    ||||||||||||||||||||||| | |||||||| |||| | || |||||||||||||  ||||||||||||||| ||||||||||||    
T  49856911 tgttgctgctctggtatatgatcttggtcatacctaccaccagtcacatcgtggtgtacttgatcctgataattctggtactccacct 49856998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 19524146 - 19524219
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcca 111  Q
    |||||||||||| | ||||||||||||||| || ||||||||||||| ||||||||||||||| ||||||||||    
T  19524146 tggtatatgatcttggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataatttaggtactcca 19524219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 13638949 - 13639032
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| ||| ||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  13638949 tgctgctgtggtatatgatcctggtcatatccatcatccgtcacatcatgttgtacctgatcctgatagttcaggtactccacc 13639032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 19157144 - 19157061
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| |||||||| || ||||| || |||| |||||||||||| |||||||||||||||    
T  19157144 tgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcatgctgtacctgatcctgatagttcaggtactccacc 19157061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 26876779 - 26876704
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  26876779 tggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 26876704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 35257845 - 35257919
Alignment:
Q  40 gtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacct 114  Q
    |||||||||||  ||||||| ||||||| || ||||||||||||| |||| ||||||||||||||||||||||||    
T  35257845 gtatatgatcccggtcatactcaccatcagtcacatcgtggtgtacctgagcctgataattcaggtactccacct 35257919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 2366238 - 2366158
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcc 110  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||| ||||| ||||||||||||    
T  2366238 tgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgttgtacctgatcttgatagttcaggtactcc 2366158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 3731317 - 3731393
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacct 114  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| ||||||||||||||||    
T  3731317 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacct 3731393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 30891101 - 30891026
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||| | |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  30891101 tggtatatgatcatggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactccacc 30891026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 31782678 - 31782755
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| |||||||| || |      |||||| ||||||||||||||||||||||||||||    
T  31782678 tgctgctgtggtatatgatcctggtcatatccaccatcagtca------ggtgtacctgatcctgataattcaggtactccacc 31782755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 2424216 - 2424255
Alignment:
Q  74 atcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  2424216 atcgtggtgtacctgatcctgatagttcaggtactccacc 2424255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 5303168 - 5303352
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| |||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5303168 catcatcatctgctatatgttgatgctctggcatatgatcctggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 5303267  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    | |||||||||||| ||||||||| |||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||    
T  5303268 cccctgctggctcgaatcaaccacctgcgactcttcaggctgtgtagtctgagaagcctcttgcgaactccctgaaccatccacc 5303352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 39845923 - 39846109
Alignment:
Q  10 catcatcatttgctatatgttgctgctc---tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggta 106  Q
    ||||||||| || ||||||||||||||    |||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39845923 catcatcatctgttatatgttgctgctgctgtggtatatgatcttggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggta 39846022  T
Q  107 ctccacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccac 193  Q
    |||||||||||||||||| |||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||    
T  39846023 ctccacctgctggctcgggtcaaccacctgcgactcttcaggttgtgtagcctgagaagcctcctgcgaactccctgaaccatccac 39846109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 35552787 - 35552606
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||| | || ||||||||||||| ||||||||||||||||||||||||    
T  35552787 catcatcatctgctatatgatgctgctctgatatatgatcctggtcatacccaccaccagtcacatcgtggtgtacctgatcctgataattcaggtactc 35552688  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatcc 191  Q
    ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||||    
T  35552687 cacctcctggctcgaatcaaccacatgcgactcttcaggctgtgtagcctgagaagcctcgtgcgaagtccctgaaccatcc 35552606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 43189192 - 43189008
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| | ||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43189192 catcatcatctcctacatgttgctgctctgatatatgatcctggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactc 43189093  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
     || |||||||||||||||| ||| | |||||||||| ||| ||||||||||| ||||||||||||| ||| |||||||||||||    
T  43189092 tacttgctggctcggatcaatcacctacgactcttcaagctgtgtagcctgagaagcctcctgcgaattccatgaaccatccacc 43189008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 40076185 - 40076369
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||||    
T  40076185 catcatcatctgttatatgttgctgctctggtatatgatcctggtcatacccactatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 40076284  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||| ||| |||||||| ||||| ||||| ||||| | || ||||||||||| ||||||||||||| |||||||||||||||||    
T  40076285 cacctcctgactcggatcgaccacttgcgaatcttctgactgtgtagcctgagaagcctcctgcgaagtccctgaaccatccacc 40076369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 34821944 - 34822128
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| || ||||||||||| ||||||||||||||| | ||||||||||||||| || |||| |||||||| || |||||||||||||||||||||    
T  34821944 catcatcatctgttatatgttgctactctggtatatgatcatggtcatacccaccatcagtcacattgtggtgtacctaatcctgataattcaggtactc 34822043  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||| |||||| |||| |||||| |||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||    
T  34822044 cacctcctggcttggatgaaccacctgcgactcttcaggctgtgtagcctaagaagcctcctgcgaagtccctgaaccatccacc 34822128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 37327958 - 37327812
Alignment:
Q  14 atcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||| || |||||| ||||||||| ||||||||||||  ||||||||  |||| || ||||||||||||| |||||||||||||||||  |||||||||    
T  37327958 atcatctggtatatgctgctgctctagtatatgatcctgatcataccc--catcagtcacatcgtggtgtacctgatcctgataattcaaatactccacc 37327861  T
Q  114 tgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgag 162  Q
    | |||| |||| | ||||||||||||||||||||||| |||||| ||||    
T  37327860 tcctgggtcgggttaaccacatgcgactcttcaggctgtgtagcttgag 37327812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 45128785 - 45128683
Alignment:
Q  87 tgatcctgataattcaggtactccacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaac 186  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||| | |||||||| |||||||||| ||| | |||||||    
T  45128785 tgatcctgataattcaggtactccacctcctggctcgggtcaaccacctgcgactcttcaggctgtctagcctgaacagcctcctgagaagtacctgaac 45128686  T
Q  187 cat 189  Q
    |||    
T  45128685 cat 45128683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 34369498 - 34369581
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  34369498 tgctgctgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacc 34369581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 34370826 - 34370909
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  34370826 tgctgctgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacc 34370909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 41249067 - 41249154
Alignment:
Q  26 atgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||||||| |||||||||||||| ||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||    
T  41249067 atgttgctgctgtggtatatgatcctggtcatacccaccatcagtcatatcgtggtgtacctgatcctgataattcaggtactccacc 41249154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 39938160 - 39938246
Alignment:
Q  26 atgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccac 112  Q
    ||||||||| | |||||||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||    
T  39938160 atgttgctgttgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccac 39938246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 39253147 - 39253044
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| | ||| ||| ||||| | |||||||||||||| |||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  39253147 catcatcatctcctacatgctgctgttgtggtatatgatcctggtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 39253048  T
Q  110 cacc 113  Q
    ||||    
T  39253047 cacc 39253044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 39602707 - 39602632
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  39602707 tggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacc 39602632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 43212637 - 43212550
Alignment:
Q  26 atgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||||||| |||||||||||||| |||||| |||||||| ||  |||||||||||| ||||||||||||||||||||||||||||    
T  43212637 atgttgctgctgtggtatatgatcctggtcatatccaccatcagtcgcatcgtggtgtacctgatcctgataattcaggtactccacc 43212550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 2985228 - 2985103
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctggctcggatcaa 129  Q
    ||||||||||||||||| | || ||||||||||||||| || ||||||||||||| || ||||||||||||||||||||   ||| |||| |||| ||||    
T  2985228 tgctgctctggtatatgttgctggtcatacccaccatcagtgacatcgtggtgtacctaatcctgataattcaggtact---cctcctgggtcgggtcaa 2985132  T
Q  130 ccacatgcgactcttcaggctatgtagcct 159  Q
    |||| || |||| |||||||| ||||||||    
T  2985131 ccacctgtgact-ttcaggctgtgtagcct 2985103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 5678159 - 5678020
Alignment:
Q  23 tatatgttgctgctctggtatatg---atcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctgg 119  Q
    ||||||||||||||||||||||||   || ||  |||||||||||||| || ||||| |||||      |||||||||||||||||||||||||||   |    
T  5678159 tatatgttgctgctctggtatatgctgatgctcatcatacccaccatcagtgacatcatggtg------atcctgataattcaggtactccacctg---g 5678069  T
Q  120 ctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcct 168  Q
    ||||| |||||||| || ||||||||||||| ||||||||||| |||||    
T  5678068 ctcgggtcaaccacctgtgactcttcaggctgtgtagcctgagaagcct 5678020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 20858299 - 20858224
Alignment:
Q  118 ggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccac 193  Q
    ||||| |||||||||| |||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  20858299 ggctcagatcaaccacctgcgactcttcaggctgtgtagcttgagaagcctcctgtgaactccctgaaccatccac 20858224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 45065319 - 45065237
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccac 112  Q
    ||||||| |||||||||||||| |||||| |||||||| || ||||| || |||| |||||||||||| ||||||||||||||    
T  45065319 tgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcatgctgtacctgatcctgatagttcaggtactccac 45065237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 15035673 - 15035754
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcca 111  Q
    ||||||| |||||||||||||| |||||| |||||||| || ||||| || |||| |||||||||||| |||||||||||||    
T  15035673 tgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcatgctgtacctgatcctgatagttcaggtactcca 15035754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 24474 - 24549
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  24474 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 24549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 488655 - 488730
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  488655 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 488730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 1053661 - 1053586
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  1053661 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 1053586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 23021257 - 23021332
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  23021257 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 23021332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 26660583 - 26660508
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  26660583 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 26660508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 42484536 - 42484611
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||||||||| ||||| || ||||  ||||||||||| |||||||||||||||    
T  42484536 tggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacttgatcctgatagttcaggtactccacc 42484611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 5198068 - 5197900
Alignment:
Q  26 atgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctggctcgga 125  Q
    ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5198068 atgttgctgctctagtaaatgatcctggtcatacccaccatccgtaacatcgtggtgtacctgatcctgataattcaggtactccacctgctggctcgga 5197969  T
Q  126 tcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  5197968 tcaaccacatgtgactcttcaggctgtgtagcctgagaagcctcctgtgaactccctgaaccatccacc 5197900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 160
Target Start/End: Original strand, 40623849 - 40623999
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||| ||  |||||||||||| ||||||||||||||||||||||||    
T  40623849 catcatcatctggtatatgttgttgctctggtatatgatcctggtcatacccaccatcagtcgcatcgtggtgtacctgatcctgataattcaggtactc 40623948  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctg 160  Q
    ||||| || | ||||  ||||||| ||||||||||||| || |||||||||    
T  40623949 cacctcctaggtcgggccaaccacctgcgactcttcagactgtgtagcctg 40623999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 42538208 - 42538109
Alignment:
Q  95 ataattcaggtactccacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||||||| |||||||| |||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||    
T  42538208 ataattcagatactccacatgctggctcggatcaaccacctgcgactcttcaggttgtgtggcctgagcagcctcctgcgaactccctgaaccatccacc 42538109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 8701177 - 8701306
Alignment:
Q  26 atgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctggctcgga 125  Q
    ||||||||||||||||||||||||||  |||||||||||||| || ||||||||||||| ||||||||||||||||||||||| ||||| |||| || |     
T  8701177 atgttgctgctctggtatatgatcctgatcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtacttcacctcctgggtctgg 8701276  T
Q  126 tcaaccacatgcgactcttcaggctatgta 155  Q
    ||| | || || ||||||||||||| ||||    
T  8701277 tcagcaacctgtgactcttcaggctgtgta 8701306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 42941412 - 42941516
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| | ||| ||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  42941412 catcatcatctcctacatgctgctgctgtggtatatgatcctggtcatacccaccatctgtaacatcgtggtgtacctgatcctgataatccaggtactc 42941511  T
Q  110 cacct 114  Q
    |||||    
T  42941512 cacct 42941516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 7758433 - 7758350
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||    
T  7758433 tgctgctgtggtatatgatcctggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtattccacc 7758350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 19227895 - 19227976
Alignment:
Q  33 tgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacct 114  Q
    ||||||||||||||||| | ||||||||||||||| || ||||||||||||| ||| ||||||||||||| |||||||||||    
T  19227895 tgctctggtatatgatcatggtcatacccaccatcagtcacatcgtggtgtacctggtcctgataattcaagtactccacct 19227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 38969208 - 38969128
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcc 110  Q
    |||||||||||||||||||||  ||||||||||||||  || ||||||||||||| |||||||||||||| ||||||||||    
T  38969208 tgctgctctggtatatgatcccggtcatacccaccattagtcacatcgtggtgtacctgatcctgataatgcaggtactcc 38969128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 19040045 - 19040128
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  19040045 tgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 19040128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 30706230 - 30706147
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  30706230 tgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactccacc 30706147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 28240776 - 28240851
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  28240776 tggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 28240851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 13760 - 13843
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| |||||||| || ||||| || | || |||||||||||| |||||||||||||||    
T  13760 tgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcatgttatacctgatcctgatagttcaggtactccacc 13843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 8579451 - 8579534
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| |||||||| || ||||| || |||| |||||| ||||| |||||||||||||||    
T  8579451 tgctgctgtggtatatgatcctggtcatatccaccatcagtcacatcatgttgtacctgatcttgatagttcaggtactccacc 8579534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 27672597 - 27672680
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| ||||||| |||||| |||||| |||||||| || ||||| || |||| |||||||||||| |||||||||||||||    
T  27672597 tgctgctgtggtatacgatcctggtcatatccaccatcagtcacatcatgctgtacctgatcctgatagttcaggtactccacc 27672680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 28877768 - 28877685
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| ||||| |||||||||    
T  28877768 tgctgctgtggtatatgatcctggtcatatccaccgtccgtcacatcatgctgtacctgatcctgatagttcagatactccacc 28877685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 27972317 - 27972252
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctga 95  Q
    |||| |||||||||||| |  | ||||||||||||||| || |||||||||||||||| |||||||    
T  27972317 tgctactctggtatatgttgttggtcatacccaccatcagtgacatcgtggtgtatctcatcctga 27972252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 20422889 - 20422828
Alignment:
Q  54 tcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctg 115  Q
    |||| ||||||||| ||  |||||||||  |||| |||||||||||| ||||||||||||||    
T  20422889 tcatgcccaccatcagtggcatcgtggtcaatctcatcctgataattaaggtactccacctg 20422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 6319492 - 6319677
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| || ||||| |||||||  | |||||||||||||||||||||    
T  6319492 catcatcatctgctatatgctgctgctctggtatatgatcctggtcatacccaccatcagtcacatcatggtgtacattatcctgataattcaggtactc 6319591  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccaccg 195  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  6319592 cacctcctggctcggatcaaccacatgcgactcttcaggctgtgtagcctgagaagcctcctgcgaagtccctgaactatccaccg 6319677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 24723014 - 24722833
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    |||| |||| ||||||||| ||   ||||||||||||||||| ||||||||||||||  || ||||||||||||| |||||| |||||||||||||||||    
T  24723014 catcgtcatatgctatatgctgtcactctggtatatgatcctggtcatacccaccattagtcacatcgtggtgtacctgatcttgataattcaggtactc 24722915  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatcc 191  Q
    ||||| ||||||| |||||||||| |||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  24722914 cacctcctggctcagatcaaccacctgcgactcttaaggctgtgtagcctgagaagcctcctgcgaagtccctgaaccatcc 24722833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 24087695 - 24087779
Alignment:
Q  27 tgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcca 111  Q
    |||||||||||| |||||||||| | ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||    
T  24087695 tgttgctgctctagtatatgatcatggtcatacccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactcca 24087779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 27617860 - 27617777
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||| || |||| ||||| |||||| |||||||||||||||    
T  27617860 tgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgctgtacctgattctgatagttcaggtactccacc 27617777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 6202285 - 6202210
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  6202285 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 6202210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 11689252 - 11689177
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  11689252 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 11689177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 22302317 - 22302242
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  22302317 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 22302242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 30828588 - 30828663
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  30828588 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 30828663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 36655320 - 36655503
Alignment:
Q  11 atcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactcc 110  Q
    |||||||| | ||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||    
T  36655320 atcatcatctcctacatgttgctgctctggtatatgatcctggtcatacccaccatctgtaacgtcgtggtgtacctgatcctgataattcaggtactcc 36655419  T
Q  111 acctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    ||||||||||||||||||||||| || ||||||||||| | ||||||||||| |||||| ||||||||||||||| ||||||||    
T  36655420 acctgctggctcggatcaaccacctgtgactcttcaggttgtgtagcctgagaagcctcttgcgaactccctgaaacatccacc 36655503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 39948725 - 39948565
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacctgctggctcggatcaa 129  Q
    ||||||| |||||||||||| | |||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39948725 tgctgctgtggtatatgatcatggtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactccacctgctggctcggatcaa 39948626  T
Q  130 ccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatc 190  Q
    |||| |||||||||| ||||| ||||||||||| |||||||||   |||||||||||||||    
T  39948625 ccacctgcgactctttaggctgtgtagcctgagaagcctcctgttcactccctgaaccatc 39948565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 29400508 - 29400595
Alignment:
Q  26 atgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||    
T  29400508 atgttgctgctgtggtatatgattctggtcatacccaccatccgtcacatcgtggtgtacctgatcatgataattcaggtactccacc 29400595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 10827966 - 10828049
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| ||||||||||||||| || ||||||||||||| |||||| |||||||||||||||||||||    
T  10827966 tgctgctgtggtatatgatcctggtcatacccaccatctgtcacatcgtggtgtacctgatcttgataattcaggtactccacc 10828049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 7187888 - 7187817
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    |||||||||||||| |||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  7187888 tggtatatgatcctggtcatatccaccatcagtcacatcgtggtgtacctgatcctgataattcaggtactc 7187817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 17421656 - 17421573
Alignment:
Q  30 tgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  17421656 tgctgctgtggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 17421573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 3939676 - 3939751
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||||||||||||||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  3939676 tggtatatgatcctagtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 3939751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 15832254 - 15832179
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  15832254 tggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 15832179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 43979656 - 43979581
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||    
T  43979656 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtatctgatcctgatagttcaggtactccacc 43979581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 45429710 - 45429635
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  45429710 tggtatatgatcctggtcatatccaccatccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 45429635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 5353091 - 5353016
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  5353091 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 5353016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 20931695 - 20931620
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||| | |||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  20931695 tggtatatgatcttggtcatatccaccatccgtcacatcatgctgtacctgatcctgatagttcaggtactccacc 20931620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 30495883 - 30495958
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  30495883 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 30495958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 43538674 - 43538749
Alignment:
Q  38 tggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    |||||||||||||| |||||| ||||| ||||| ||||| || |||| |||||||||||| |||||||||||||||    
T  43538674 tggtatatgatcctggtcatatccaccgtccgtcacatcatgatgtacctgatcctgatagttcaggtactccacc 43538749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 17884 - 18068
Alignment:
Q  10 catcatcatttgctatatgttgctgctctggtatatgatcctagtcatacccaccatccgtaacatcgtggtgtatctgatcctgataattcaggtactc 109  Q
    ||||||||| | ||||||| ||||||| |||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||||    
T  17884 catcatcatcttctatatgctgctgctttggtatatgatcctggtcatacccactatcggtcacatcgtggtgtacctgatcctgataattcaggtactc 17983  T
Q  110 cacctgctggctcggatcaaccacatgcgactcttcaggctatgtagcctgagcagcctcctgcgaactccctgaaccatccacc 194  Q
    |||||||||| |||||||| |||| | ||||| |||||||| |||| |||||| ||||||||||||||||||||||||| |||||    
T  17984 cacctgctggttcggatcacccacctacgacttttcaggctgtgtatcctgagaagcctcctgcgaactccctgaaccacccacc 18068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 14609 - 14650
Alignment:
Q  72 acatcgtggtgtatctgatcctgataattcaggtactccacc 113  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  14609 acatcgtggtgtacctgatcctgataattcaggtactccacc 14650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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