View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21517_high_2 (Length: 575)
Name: NF21517_high_2
Description: NF21517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21517_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 19 - 565
Target Start/End: Complemental strand, 38142908 - 38142360
Alignment:
| Q |
19 |
cacatctggtagaatccttaaatgcagattcagtggcatgtcaagaagctgtcctggatggatgcactttttctgctcatacaaggttggtcagcatgcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38142908 |
cacatctggtagaatccttaaatgcagattcagtggcatgtcaagaagctgtcctggatggatgcactttttctgctcatacaaggttggtcagcatgcc |
38142809 |
T |
|
| Q |
119 |
ctgttgaagtctcaagagctcagtcaaatgcagctgcatatgctattcctttactgcagaacttaatccaatttggtccggttctattttttgagaaggc |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38142808 |
ctgttgaagtctcaagagatcagtcaaatgcagctgcatatgctattcctttactgcagaacttaatccaatttggtccggttctattttttgagaaggc |
38142709 |
T |
|
| Q |
219 |
ggaatttatattggtgatgatcgtcaagcgtggtaacaatatgatacagtgtgttcg-aatcaaggtaagattacactcgaggcgaaccaaggtaannnn |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
38142708 |
ggaatttatattggtgatgatcgtcaagcgtggtaacaatatgagacagtgtgttggaaatcaaggtaagattacactcgaggcgaaccaaggtaatttt |
38142609 |
T |
|
| Q |
318 |
nnngtttatttatgttttcacatttatctatctgacaacctaaaatgtttaaatcatctaatt-aatcacttatagattgattatgtcaattcataattg |
416 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38142608 |
tttgtttatttatgttttcacatttatctatccgacaacctaaaatgtttaaatcatctaattaaatcacttatagattgattatgtcaattcataattg |
38142509 |
T |
|
| Q |
417 |
attaattaattagacacttgagtctaatgatgcagattattaaatatgtttaaaccaagtaacattatgttttatactcatgctgatcaggttgtctcaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38142508 |
attaattaattagacacttgagtctaatgatgcagattattaaatatgtttaaaccaagtaacattatgttttatactcatgctgatcaggttgtctcaa |
38142409 |
T |
|
| Q |
517 |
ctgatcctaatccagaatgggatgagaggtttacatacatggtcctttg |
565 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38142408 |
ctggtcctaatccagaatgggatgagaggtttacatacatggtcctttg |
38142360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 38157271 - 38157160
Alignment:
| Q |
77 |
tggatgcactttttctgctcatacaaggttggtcagcatgccctgttgaagtctcaagagctcagtcaaatgcagctgcatatgctattcctttactgca |
176 |
Q |
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|||| ||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
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| T |
38157271 |
tggaagcactttttcttctcagacaagcttggtcagcatgccctgctgaagtctcaagagctcagtcaattgcagctgcagatgctattccttttctgca |
38157172 |
T |
|
| Q |
177 |
gaacttaatcca |
188 |
Q |
| |
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| |||||||||| |
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| T |
38157171 |
gtacttaatcca |
38157160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 38157099 - 38157048
Alignment:
| Q |
228 |
attggtgatgatcgtcaagcgtggtaacaatatgatacagtgtgttcgaatc |
279 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||| |||| ||||| |
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| T |
38157099 |
attggtggtgatcgtcaagcgtggtaacaatatgagacagtctgttggaatc |
38157048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 39781128 - 39781039
Alignment:
| Q |
79 |
gatgcactttttctgctcatacaaggttggtcagcatgccctgttgaagtctcaagagctcagtcaaatgcagctgcatatgctattcct |
168 |
Q |
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||||||||||||||||||| |||| ||||||||||||||| | ||||| |||||||| ||||| | ||||| ||| ||||||||||| |
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| T |
39781128 |
gatgcactttttctgctcaggcaagcttggtcagcatgcccagcagaagtttcaagagcccagtccatagcagccgcagatgctattcct |
39781039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 425
Target Start/End: Original strand, 25189444 - 25189476
Alignment:
| Q |
393 |
attgattatgtcaattcataattgattaattaa |
425 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
25189444 |
attgattatttcaattcataattgattaattaa |
25189476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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