View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21517_low_1 (Length: 638)
Name: NF21517_low_1
Description: NF21517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21517_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 41907437 - 41907255
Alignment:
| Q |
20 |
tcgcaccactgatgttgaaaactacatcgagagataagtgagaggtggatttgtttatgtggggggagaggcggcgcggaggtgttgagattaggtgaga |
119 |
Q |
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| T |
41907437 |
tcgcaccaccgatgttgaaagctacatcgagagataagtgagaggtggatttgtttatgtggggggagaggcggcgcggaggtgttgagattaggtgaga |
41907338 |
T |
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| Q |
120 |
gaagagataaaaaccttttttctcttttgttttgcctcgagaaaatattcggattatgaatttcaattgaagaagaatcattc |
202 |
Q |
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| T |
41907337 |
gaagagataaaaacctttttcctcttttgctttgcctcgagaaaatatttgaattatgaatttcaattgaagaagaatcattc |
41907255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 332 - 485
Target Start/End: Complemental strand, 41907125 - 41906972
Alignment:
| Q |
332 |
catccaatacattccatgattttatgtaacaaaaacatataatagaaaatgatggttgtgtaatatgtatgcaa-aaaatgtaatatatatgcgtaaata |
430 |
Q |
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| T |
41907125 |
catccaagacgttccatgattttatgtaacaaaaacatataatagaaaatgatggttgtgtaatatgtatgcaaaaaaatgtaatatatatgcgtaaata |
41907026 |
T |
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| Q |
431 |
tgaattaataaaaccaaggactannnnnnncttctgcaaaaataaattcgtttat |
485 |
Q |
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| T |
41907025 |
tgaattaaaaaaaccaaggactattttttt-ttctgcaaaaataaattcgtttat |
41906972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 571 - 621
Target Start/End: Complemental strand, 41906886 - 41906836
Alignment:
| Q |
571 |
taatcatattacataagggtgtcatttttgtattcttgaatatagtcattt |
621 |
Q |
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| T |
41906886 |
taatcatattacataagggtgtcatttttgtattcttgaatatagtcattt |
41906836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 41907191 - 41907150
Alignment:
| Q |
266 |
tcaaactcaaagaaaaataattccaacaattgcaattacagg |
307 |
Q |
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| T |
41907191 |
tcaaactcaaagaaaaataattccaacaattgcagttacagg |
41907150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 11717845 - 11717949
Alignment:
| Q |
30 |
gatgttgaaaactacatcga--gagataagtgagaggtggatttgtttatgtgggggg-agaggcggcgcggaggtgttgagattaggtgagagaagaga |
126 |
Q |
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| T |
11717845 |
gatgttgaaagctacatcaaaagagataagtgagagctcaatttgtttatgtgggggggagagatggcacggaggtgttgagattaggtgagagaagaga |
11717944 |
T |
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| Q |
127 |
taaaa |
131 |
Q |
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|||| |
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| T |
11717945 |
gaaaa |
11717949 |
T |
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