View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21517_low_13 (Length: 237)

Name: NF21517_low_13
Description: NF21517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21517_low_13
NF21517_low_13
[»] chr4 (17 HSPs)
chr4 (1-221)||(2714161-2714380)
chr4 (39-166)||(9268308-9268435)
chr4 (39-166)||(2681101-2681228)
chr4 (42-161)||(52327007-52327127)
chr4 (39-160)||(779871-779992)
chr4 (42-159)||(38567968-38568085)
chr4 (42-162)||(7907405-7907523)
chr4 (39-160)||(23559991-23560112)
chr4 (68-147)||(30875381-30875460)
chr4 (42-160)||(5415156-5415274)
chr4 (68-160)||(55875842-55875934)
chr4 (86-159)||(206266-206341)
chr4 (42-162)||(41377380-41377500)
chr4 (68-159)||(46382018-46382109)
chr4 (86-123)||(27757768-27757805)
chr4 (95-160)||(30052370-30052435)
chr4 (93-157)||(35359645-35359709)
[»] chr8 (9 HSPs)
chr8 (39-166)||(17312846-17312973)
chr8 (40-166)||(9682354-9682480)
chr8 (43-166)||(27594261-27594384)
chr8 (68-162)||(1156271-1156365)
chr8 (39-160)||(40278965-40279086)
chr8 (42-160)||(37479192-37479310)
chr8 (42-158)||(18227002-18227118)
chr8 (93-161)||(45251488-45251556)
chr8 (93-157)||(40713779-40713843)
[»] chr1 (15 HSPs)
chr1 (39-166)||(46823626-46823753)
chr1 (39-160)||(7900132-7900253)
chr1 (42-162)||(1035724-1035844)
chr1 (68-162)||(37457629-37457723)
chr1 (39-160)||(23571007-23571128)
chr1 (68-160)||(50428478-50428570)
chr1 (42-158)||(43496377-43496493)
chr1 (42-160)||(19993376-19993494)
chr1 (68-162)||(51613260-51613354)
chr1 (89-166)||(26707118-26707195)
chr1 (39-97)||(26723252-26723311)
chr1 (43-149)||(10574374-10574480)
chr1 (93-159)||(19322821-19322887)
chr1 (68-162)||(47394377-47394471)
chr1 (91-160)||(19466327-19466396)
[»] chr7 (13 HSPs)
chr7 (70-164)||(8404754-8404848)
chr7 (39-161)||(48252886-48253009)
chr7 (68-162)||(43692549-43692643)
chr7 (42-149)||(36725802-36725909)
chr7 (66-155)||(49080769-49080857)
chr7 (68-160)||(49081237-49081329)
chr7 (94-160)||(23869939-23870005)
chr7 (68-160)||(43598826-43598918)
chr7 (66-149)||(46700864-46700947)
chr7 (42-160)||(44396388-44396506)
chr7 (95-149)||(38346439-38346493)
chr7 (42-131)||(32485437-32485526)
chr7 (86-162)||(12879278-12879354)
[»] chr6 (6 HSPs)
chr6 (41-166)||(19763518-19763644)
chr6 (39-166)||(19789206-19789334)
chr6 (68-146)||(13685400-13685478)
chr6 (68-137)||(30775356-30775425)
chr6 (68-149)||(2844147-2844228)
chr6 (61-150)||(10682518-10682607)
[»] chr5 (8 HSPs)
chr5 (39-160)||(39060173-39060294)
chr5 (39-166)||(9959311-9959438)
chr5 (94-162)||(4925098-4925166)
chr5 (61-160)||(23089325-23089424)
chr5 (68-158)||(14913466-14913556)
chr5 (68-158)||(34769571-34769661)
chr5 (39-124)||(14947660-14947745)
chr5 (94-149)||(16280927-16280982)
[»] chr3 (17 HSPs)
chr3 (63-160)||(1995577-1995674)
chr3 (39-160)||(15877734-15877855)
chr3 (57-166)||(40793167-40793276)
chr3 (70-166)||(35846164-35846259)
chr3 (42-160)||(36177214-36177332)
chr3 (68-158)||(35424138-35424228)
chr3 (39-160)||(52313860-52313981)
chr3 (39-160)||(53464270-53464391)
chr3 (43-162)||(35496088-35496207)
chr3 (42-160)||(4489847-4489965)
chr3 (68-160)||(49786948-49787040)
chr3 (86-141)||(20809642-20809697)
chr3 (71-160)||(49644364-49644453)
chr3 (117-160)||(45240856-45240899)
chr3 (68-135)||(45266899-45266966)
chr3 (87-159)||(14898461-14898533)
chr3 (96-160)||(29096142-29096206)
[»] chr2 (13 HSPs)
chr2 (39-130)||(7395455-7395546)
chr2 (39-162)||(9104547-9104670)
chr2 (68-161)||(32914457-32914551)
chr2 (42-159)||(6858971-6859088)
chr2 (68-160)||(18565740-18565832)
chr2 (93-157)||(39375711-39375775)
chr2 (44-127)||(3739897-3739980)
chr2 (68-149)||(14657523-14657603)
chr2 (40-160)||(8443224-8443344)
chr2 (92-143)||(8320451-8320502)
chr2 (93-160)||(8322172-8322239)
chr2 (42-161)||(38609917-38610036)
chr2 (68-160)||(40095791-40095883)
[»] scaffold0015 (1 HSPs)
scaffold0015 (42-160)||(56588-56706)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2714161 - 2714380
Alignment:
Q  1 attggtcctccaaatttttcgattctttagtcggataccacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatatta 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  2714161 attggtcctccaaatttttcgattctttagtcggatgccacccacatccatgccacttacatgggttgtataaatggatctcacgtaatactttatatta 2714260  T
Q  101 tttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactcttacaatgggtcctaaattccatatttataaaaaatggtt 200  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||    
T  2714261 tttcatactttccaattatttaaatcatttaactatattttttaaatatcgataccactcttacaat-gatcctaaattccatatttataaaaaatggtt 2714359  T
Q  201 gtgattatacaatgtcgtatg 221  Q
    |||||||||||||||||||||    
T  2714360 gtgattatacaatgtcgtatg 2714380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 9268308 - 9268435
Alignment:
Q  39 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 137  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||| |    
T  9268308 cacccacatccatgccactctacatgggtggtataaatgggtccca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactaca 9268406  T
Q  138 ttttttaaatatcaataccactcttacaa 166  Q
    |||| |||| ||| |||||| ||||||||    
T  9268407 ttttctaaacatccataccattcttacaa 9268435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 2681228 - 2681101
Alignment:
Q  39 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 137  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||| |    
T  2681228 cacccacatccatgccactctacatgggtggtataaatgggtccca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactaca 2681130  T
Q  138 ttttttaaatatcaataccactcttacaa 166  Q
    | || |||| ||| |||||| ||||||||    
T  2681129 tcttctaaacatccataccattcttacaa 2681101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 52327127 - 52327007
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    |||||||||||||||  | |||  | ||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||| ||||| |||||    
T  52327127 ccacatccatgccacccatatgagtagtataaatgggtcccacataatattttatattacttcacacttttcaattatttaaatcactcaactacatttt 52327028  T
Q  142 t-taaatatcaataccactct 161  Q
    | |||||||| ||||||||||    
T  52327027 tctaaatatccataccactct 52327007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 779871 - 779992
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 138  Q
    ||||||||||||| ||||  | |||| | ||||||||||||| ||| |||||| |||||||| |||| | ||||| |||||||||| |||| ||||||||    
T  779871 cacccacatccataccacccatatgggtggtataaatgggtctcacataatacattatattacttcacatttttccattatttaaaccactcaactatat 779970  T
Q  139 tttttaaatatcaataccactc 160  Q
    ||| |||||||| |||||||||    
T  779971 tttctaaatatccataccactc 779992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 38568085 - 38567968
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    ||||||||||||||||||||| | | |||| |||||  | |||  ||||  |||||||| ||| ||||||||||||||||||| |||| ||||| |||||    
T  38568085 ccacatccatgccacttacattggtggtatgaatggacctcactcaatatattatattacttcttacttttcaattatttaaaccactcaactacatttt 38567986  T
Q  142 ttaaatatcaataccact 159  Q
    ||||||||  ||||||||    
T  38567985 ttaaatattcataccact 38567968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 7907523 - 7907405
Alignment:
Q  42 ccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattt 140  Q
    |||||||||||||||| |  |||| | ||||||||||||||||| |||||||||||| |   ||| ||||| |||||||||||| |||| ||||| ||||    
T  7907523 ccacatccatgccactctttatgggtggtataaatgggtcccacataatactttatact---tcacactttccaattatttaaaccactcaactacattt 7907427  T
Q  141 tttaaatatcaataccactctt 162  Q
    | |||||||| ||| |||||||    
T  7907426 tctaaatatccatatcactctt 7907405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 23559991 - 23560112
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 138  Q
    ||||||||||||||||||  | |||| | ||||||||||| ||||| |||||  ||| |||| || | ||||| |||||||||||| |||| ||||| ||    
T  23559991 cacccacatccatgccacccaaatgggtggtataaatgggacccacataatatattacattactttacactttccaattatttaaaccactcaactacat 23560090  T
Q  139 tttttaaatatcaataccactc 160  Q
    ||| |||||||| || ||||||    
T  23560091 tttctaaatatccatgccactc 23560112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 30875460 - 30875381
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaat 147  Q
    ||||||||| |||||||  ||||| ||||||||||| | ||||  ||||||||||||||||| ||||||||||| |||||    
T  30875460 gtataaatgagtcccactgaatacattatattattttaaacttcccaattatttaaatcactaaactatattttctaaat 30875381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 5415156 - 5415274
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    |||||||||||||||  | |||||| |||||||||||  |||| |||||  |||||||| || | ||||  ||||||||||| ||||| ||||| |||||    
T  5415156 ccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactttacacttcccaattatttaactcactcaactacatttt 5415255  T
Q  142 ttaaatatcaataccactc 160  Q
     |||||||  |||||||||    
T  5415256 ctaaatattcataccactc 5415274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 55875934 - 55875842
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    ||||||||||||||||| |||||  |||||||| |||| |  | ||||||| ||||| |||| ||||| |||||||||||||  |||||||||    
T  55875934 gtataaatgggtcccacataataaattatattacttcacatctctcaattacttaaaccactcaactacattttttaaatattcataccactc 55875842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 206341 - 206266
Alignment:
Q  86 taatactttatattatttcatacttttcaattatttaaatcacttaactatatt--ttttaaatatcaataccact 159  Q
    ||||| |||||||||||||||| ||||||||||||||||  | | |||||||||  ||||||||||| ||| ||||    
T  206341 taatattttatattatttcatatttttcaattatttaaacaattcaactatatttcttttaaatatctataacact 206266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 41377500 - 41377380
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    |||| |||||| ||| || |||||| |||||||||||||  || |||||  |||||||| |||  |||| |||||||||| ||  ||| ||||| |||||    
T  41377500 ccacttccatgtcacctatatggatagtataaatgggtcttacataatatattatattacttcccacttctcaattattttaactactcaactacatttt 41377401  T
Q  142 ttaaatatcaataccactctt 162  Q
    ||||||||  |||| ||||||    
T  41377400 ttaaatattcatactactctt 41377380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 46382109 - 46382018
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccact 159  Q
    ||||||||||  || || |||||  |||||||| |||| |||| ||||||||||||| ||||  ||||||||||| ||||||  ||||||||    
T  46382109 gtataaatggaccctacttaatatattatattagttcacacttctcaattatttaaaccactccactatatttttcaaatattcataccact 46382018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 27757768 - 27757805
Alignment:
Q  86 taatactttatattatttcatacttttcaattatttaa 123  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  27757768 taatattttatattattttatacttttcaattatttaa 27757805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 30052435 - 30052370
Alignment:
Q  95 atattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    |||||| |||||| |||| ||||||||||| || | ||||| |||||||||||||| |||| ||||    
T  30052435 atattacttcatattttttaattatttaaaccaatcaactacattttttaaatatccatactactc 30052370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 35359645 - 35359709
Alignment:
Q  93 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatacca 157  Q
    |||||||||||||||| || ||| |||||||   ||||||||| ||||| |||||||| ||||||    
T  35359645 ttatattatttcatacattccaactatttaagcaacttaactaaattttctaaatatccatacca 35359709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 17312973 - 17312846
Alignment:
Q  39 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 137  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||| |||| |||||||||||||||||| |||| ||||| |    
T  17312973 cacccacatccatgccactctacatggatggtataaatgggtctca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactaca 17312875  T
Q  138 ttttttaaatatcaataccactcttacaa 166  Q
    | || |||||||| |||||| ||||||||    
T  17312874 tcttctaaatatccataccattcttacaa 17312846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 9682480 - 9682354
Alignment:
Q  40 acccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 138  Q
    |||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||| ||    
T  9682480 acccacatccatgccactctacatgggtggtataaatgggtccca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactacat 9682382  T
Q  139 tttttaaatatcaataccactcttacaa 166  Q
    ||| |||| ||| |||||| ||||||||    
T  9682381 tttctaaacatccataccattcttacaa 9682354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 166
Target Start/End: Complemental strand, 27594384 - 27594261
Alignment:
Q  43 cacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    ||||||||||||||| ||||||| | | |||||||||||||||||||| ||||||||||||||| || || |||||||||||| |||| ||||| |||||    
T  27594384 cacatccatgccactctacatgg-tggaataaatgggtcccacgtaattctttatattatttcacaccttccaattatttaaaccactcaactacatttt 27594286  T
Q  142 ttaaatatcaataccactcttacaa 166  Q
     |||||||  |||||||||||||||    
T  27594285 ctaaatattcataccactcttacaa 27594261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 1156365 - 1156271
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 162  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||  |||||||||||| |||| |||||||| || |||||||| |||||||||||    
T  1156365 gtataaatgggtctcacgtaatacaatatattatttcacacttcccaattatttaaaccactaaactatatcttctaaatatccataccactctt 1156271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 40279086 - 40278965
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 138  Q
    ||||||||| ||||||||  | |||  | ||||||||||| ||||| |||||  |||||||| || ||||||| |||||||||||| |||| ||||| ||    
T  40279086 cacccacattcatgccacccaaatgagtggtataaatgggacccacataatatattatattactttatactttccaattatttaaaccactcaactacat 40278987  T
Q  139 tttttaaatatcaataccactc 160  Q
    ||| |||||||| |||||||||    
T  40278986 tttctaaatatccataccactc 40278965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 37479310 - 37479192
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata-ttt 140  Q
    |||||||||||||||||| |||||| |||||||||  ||| || |||||  |||||||| || | |||||||||||||||||| |||| ||||| | |||    
T  37479310 ccacatccatgccacttatatggatggtataaatgaatcc-acataatatattatattactttaaacttttcaattatttaaaccactcaactacatttt 37479212  T
Q  141 tttaaatatcaataccactc 160  Q
    |||||||||| |||| ||||    
T  37479211 tttaaatatccatactactc 37479192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 18227118 - 18227002
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    |||||||||||||||  |  ||| | ||||||| ||||||||| |||||| ||||||||  ||| ||||  |||||||||||| ||   ||||| |||||    
T  18227118 ccacatccatgccacccatttgggtggtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccatccaactacatttt 18227019  T
Q  142 ttaaatatcaataccac 158  Q
    ||||||||| |||||||    
T  18227018 ttaaatatccataccac 18227002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 45251488 - 45251556
Alignment:
Q  93 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactct 161  Q
    |||| |||||||| | ||||| |||||||||| ||||||| || |||||||||||||| |||| |||||    
T  45251488 ttatgttatttcacatttttctattatttaaaccacttaaatacattttttaaatatccatactactct 45251556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 40713779 - 40713843
Alignment:
Q  93 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatacca 157  Q
    ||||||||||||| |||||| |||||||||||  | | ||| | |||||||||||||| ||||||    
T  40713779 ttatattatttcacacttttaaattatttaaacaagtaaaccacattttttaaatatctatacca 40713843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 46823753 - 46823626
Alignment:
Q  39 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 137  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||| |    
T  46823753 cacccacatccatgccactctacatgggtggtataaatgggtccca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactaca 46823655  T
Q  138 ttttttaaatatcaataccactcttacaa 166  Q
    |||| |||| ||| |||||| ||||||||    
T  46823654 ttttctaaacatccataccattcttacaa 46823626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 7900132 - 7900253
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 138  Q
    |||||||||||||||||| || |||||| ||||||||||| ||||| |||||  |||||||| || ||||||  |||||||||||| |||| ||||| ||    
T  7900132 cacccacatccatgccacctaaatggatcgtataaatgggacccacataatatattatattactttatacttcccaattatttaaaccactcaactacat 7900231  T
Q  139 tttttaaatatcaataccactc 160  Q
    ||| |||||||| |||||||||    
T  7900232 tttctaaatatccataccactc 7900253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 1035724 - 1035844
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    |||||||||| ||||| | |||| | ||||| |||||||||| |||||||  |||||||||||| |||| ||||||||||||| |||| |||||||||||    
T  1035724 ccacatccataccactcatatgggtggtatatatgggtcccatgtaatacaatatattatttcacacttctcaattatttaaaccactaaactatatttt 1035823  T
Q  142 ttaaatatcaataccactctt 162  Q
     |||||||  |||||||||||    
T  1035824 ctaaatatacataccactctt 1035844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 37457629 - 37457723
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 162  Q
    ||||||||||||||||||||||||  |||||||||||| |||| ||||||||| ||| |||| ||||||||||| |||||||  |||||||||||    
T  37457629 gtataaatgggtcccacgtaatacaatatattatttcacacttctcaattattaaaaccactcaactatattttctaaatatacataccactctt 37457723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 23571128 - 23571007
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 138  Q
    ||||| ||||||| ||||  | |||| | ||||||||||||||||| |||||| |||||||| |||| | ||||| ||||||||||  ||| ||||||||    
T  23571128 cacccgcatccataccacccatatgggtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaacaactcaactatat 23571029  T
Q  139 tttttaaatatcaataccactc 160  Q
    |||||||||||| |||||||||    
T  23571028 tttttaaatatccataccactc 23571007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 50428570 - 50428478
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    |||||||||| || |||| ||||  |||||||| |||| |||| |||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  50428570 gtataaatggatctcacgcaataaattatattacttcacacttctcaattatttaaatcactcaactatattttctaaatatccataccactc 50428478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 43496377 - 43496493
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    |||||||||||||||  |  ||||| ||||||| ||||||||| |||||| ||||||||  ||| |||| |||||||||||||  | | ||||| |||||    
T  43496377 ccacatccatgccacccatttggatggtataaacgggtcccacataatacattatattacctcacacttctcaattatttaaactattcaactacatttt 43496476  T
Q  142 ttaaatatcaataccac 158  Q
    ||||||||| |||||||    
T  43496477 ttaaatatccataccac 43496493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 19993494 - 19993376
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    |||||||||||| ||| | |||| | ||||| |||||  |||| |||||  |||||||| || | |||||| ||||||||||| |||| |||||||||||    
T  19993494 ccacatccatgcaactcaaatgggtggtatagatgggatccacataatatattatattactttacactttttaattatttaaaccactcaactatatttt 19993395  T
Q  142 ttaaatatcaataccactc 160  Q
     |||||||| |||||||||    
T  19993394 ctaaatatccataccactc 19993376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 51613260 - 51613354
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 162  Q
    |||||||||| |||||| ||||| ||||||||| |||| ||||| |||||||||||| |||| ||||| ||||| ||||||   |||||||||||    
T  51613260 gtataaatggatcccacataataatttatattacttcacactttccaattatttaaaccactcaactacattttctaaatactcataccactctt 51613354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 26707195 - 26707118
Alignment:
Q  89 tactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactcttacaa 166  Q
    |||||||||||| |||| |||||||||||||||||| || | ||||| ||||| |||||||  |||||||||||||||    
T  26707195 tactttatattagttcacacttttcaattatttaaaccattcaactacattttctaaatattcataccactcttacaa 26707118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 26723311 - 26723252
Alignment:
Q  39 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttata 97  Q
    ||||||||||||||||||| ||||||| | |||||||| || ||||||||||||||||||    
T  26723311 cacccacatccatgccactctacatgggtggtataaataggccccacgtaatactttata 26723252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 10574480 - 10574374
Alignment:
Q  43 cacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttt 142  Q
    ||||||||||||||| | ||   | ||||||||| || |||| |||||   ||||||| |||| | || |||||||||||||||||| || |||||||||    
T  10574480 cacatccatgccactaatataagtggtataaatgagttccacataatataatatattacttcacatttctcaattatttaaatcactcaattatattttt 10574381  T
Q  143 taaatat 149  Q
    |||||||    
T  10574380 taaatat 10574374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 19322887 - 19322821
Alignment:
Q  93 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccact 159  Q
    |||||||| | ||||||| ||||||||||||| || | ||||| |||||||||||||| ||||||||    
T  19322887 ttatattactacatacttctcaattatttaaaccattcaactacattttttaaatatccataccact 19322821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 47394377 - 47394471
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 162  Q
    |||||||||||| |||| |||||| |||||||| |||| ||||  ||||||||||||  |||   ||| |||||||||||||  |||||||||||    
T  47394377 gtataaatgggttccacataatacattatattacttcacacttcccaattatttaaactactcgtctacattttttaaatattcataccactctt 47394471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 19466327 - 19466396
Alignment:
Q  91 ctttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    ||||||| |||| || |||| |||||||||||||  |||  |||||||||||||||||||||||| ||||    
T  19466327 ctttataatattacacacttctcaattatttaaactactccactatattttttaaatatcaatactactc 19466396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 8404754 - 8404848
Alignment:
Q  70 ataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactcttac 164  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| || || |||||||||||||| | |||||||||||    
T  8404754 ataaatgggtcccacgtaatactttatattatttcacactttccaattatttaaaccactcaattacattttttaaatatccacaccactcttac 8404848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 48253009 - 48252886
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 138  Q
    ||||||||||||||||||  | |||  | ||||||||||||||||  ||||| ||||||||| |||| ||||| |||||||||||| |||| ||||| ||    
T  48253009 cacccacatccatgccacccatatgagtagtataaatgggtcccatataatattttatattacttcacactttccaattatttaaaccactcaactacat 48252910  T
Q  139 tttt-taaatatcaataccactct 161  Q
    |||| |||||||| ||||||||||    
T  48252909 ttttctaaatatccataccactct 48252886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 43692643 - 43692549
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 162  Q
    |||||||| |||||||| |||||| ||||||||||||| |||| ||||||||||||| |||| | ||| |||||||||||||  |||||||||||    
T  43692643 gtataaataggtcccacataatacattatattatttcacacttctcaattatttaaaccactcatctaaattttttaaatatttataccactctt 43692549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 36725909 - 36725802
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    |||||||||| ||||| |||||| | |||||||||| |||||| |||| ||||||||||||| | |||| ||||||||||||| |||| ||||| | |||    
T  36725909 ccacatccataccactcacatgggtggtataaatggatcccacttaattctttatattattttacacttctcaattatttaaaccactcaactacaattt 36725810  T
Q  142 ttaaatat 149  Q
     |||||||    
T  36725809 ctaaatat 36725802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 49080769 - 49080857
Alignment:
Q  66 ttgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatac 155  Q
    |||||||||||||||  || |||||  |||||||| |||| |||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  49080769 ttgtataaatgggtcttacataatatattatattacttcacacttttcaattatttaaaccactt-actacattttttaaatatcaatac 49080857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 49081329 - 49081237
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    ||||||||||||| ||  |||||| ||||||||||| ||| ||||||||||||||||||| | | ||| ||||| |||||||  |||||||||    
T  49081329 gtataaatgggtctcatataatacattatattattttatatttttcaattatttaaatcattcatctacattttctaaatatttataccactc 49081237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 23870005 - 23869939
Alignment:
Q  94 tatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    ||||||| |||| ||||||||||| ||||||  ||||||||||||||| |||||||| |||||||||    
T  23870005 tatattacttcacacttttcaattttttaaactacttaactatattttctaaatatccataccactc 23869939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 43598918 - 43598826
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    ||||||||||  || || |||||  |||||||| |||| |||| ||||||||||||| |||| |||||||||||| ||||||  |||||||||    
T  43598918 gtataaatggaccctacttaatatattatattagttcacacttctcaattatttaaaccactcaactatatttttcaaatattcataccactc 43598826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 46700947 - 46700864
Alignment:
Q  66 ttgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 149  Q
    |||||||||||| || ||| |||| ||||||| ||||||| |||| ||||||||||||| ||||  | |||||||| |||||||    
T  46700947 ttgtataaatggctctcacttaattctttatactatttcacacttctcaattatttaaaccactatattatattttctaaatat 46700864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 44396506 - 44396388
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    |||||||||||||||  | |||||| |||||||||||  |||| |||||  |||||||| || | ||||  |||||||||||  |||| ||||| |||||    
T  44396506 ccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactttacacttcccaattatttaacccactcaactacatttt 44396407  T
Q  142 ttaaatatcaataccactc 160  Q
     |||||||  |||||||||    
T  44396406 ctaaatattcataccactc 44396388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 38346439 - 38346493
Alignment:
Q  95 atattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 149  Q
    |||||| |||||| |||| ||||||||||| |||| ||||| |||||||||||||    
T  38346439 atattacttcatattttttaattatttaaaccactcaactacattttttaaatat 38346493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 32485437 - 32485526
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcactta 131  Q
    |||||||||| ||||| | || | | |||| |||||||||||| |||||| |||||||| ||||  ||| | ||||||||||| ||||||    
T  32485437 ccacatccataccactcatatcggtggtatcaatgggtcccacataatacattatattacttcacgcttcttaattatttaaaccactta 32485526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 12879278 - 12879354
Alignment:
Q  86 taatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 162  Q
    ||||| ||||||||| |||| |||| |||||||||||||  ||  ||||||||||| |||||||  |||||| ||||    
T  12879278 taatattttatattacttcacacttctcaattatttaaacaacacaactatattttctaaatattcataccattctt 12879354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 19763518 - 19763644
Alignment:
Q  41 cccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatt 139  Q
    |||||||| |||||||| ||||||| | |||||| |||||||||||||||| ||||||||| |||| ||||| |||||||||||| ||||||| || |||    
T  19763518 cccacatctatgccactctacatgggtggtataactgggtcccacgtaatattttatattacttcacactttccaattatttaaaccacttaattacatt 19763617  T
Q  140 ttttaaatatcaataccactcttacaa 166  Q
    || |||||||  |||||||||||||||    
T  19763618 ttctaaatattcataccactcttacaa 19763644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 19789206 - 19789334
Alignment:
Q  39 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 137  Q
    |||||||||| ||| |||| ||||||| | |||||| |||||||||||||||| |||||||||   || |||||||||||||||||||||||||| || |    
T  19789206 cacccacatctatgtcactctacatgggtggtataactgggtcccacgtaatattttatattacgccacacttttcaattatttaaatcacttaattaca 19789305  T
Q  138 ttttttaaatatcaataccactcttacaa 166  Q
    |||| |||||||  ||| |||||||||||    
T  19789306 ttttctaaatattcatatcactcttacaa 19789334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 13685400 - 13685478
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaa 146  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||| ||||||||||| ||||    
T  13685400 gtataaatgggtcccacataatacattatattattttatacttttcaattatttaaaacactcaactatattttctaaa 13685478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 30775356 - 30775425
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 137  Q
    |||||||||||||| || |||||| |||||||| |||| |||||||||||||||||| |||| |||||||    
T  30775356 gtataaatgggtcctacataatacattatattacttcacacttttcaattatttaaaccactcaactata 30775425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 2844228 - 2844147
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 149  Q
    ||||||||| ||  ||| |||||| |||||||| |||| ||||  |||||||||||| |||| ||||| |||||||||||||    
T  2844228 gtataaatgagtttcacataatacattatattacttcacacttcccaattatttaaaccactcaactacattttttaaatat 2844147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 10682607 - 10682518
Alignment:
Q  61 atggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatc 150  Q
    |||||| || |||||||  ||||| |||||  |||||||| |||| |||| ||||||||||||| |||| ||||| |||||| |||||||    
T  10682607 atggatggtttaaatggaccccacttaatatattatattacttcacacttctcaattatttaaaccactcaactacatttttcaaatatc 10682518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 39060173 - 39060294
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 138  Q
    ||||||||| |||  ||| || |||| | ||||||||||||||||| |||||| |||||||| |||| ||||||| |||||||||| |||| ||||||||    
T  39060173 cacccacatacatatcacctatatgggtggtataaatgggtcccacataatacattatattacttcacacttttcgattatttaaaccactcaactatat 39060272  T
Q  139 tttttaaatatcaataccactc 160  Q
    ||| |||||||| ||| |||||    
T  39060273 tttctaaatatccatatcactc 39060294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 9959438 - 9959311
Alignment:
Q  39 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 137  Q
    |||||||||||||| |||| ||||||| | |||||||||||||| ||||||||||||||| || |||| ||||| ||||||||||||  ||| ||||| |    
T  9959438 cacccacatccatgtcactctacatgggtggtataaatgggtcc-acgtaatactttatactacttcacactttccaattatttaaactactcaactaca 9959340  T
Q  138 ttttttaaatatcaataccactcttacaa 166  Q
    |||| |||||||| ||||| || ||||||    
T  9959339 ttttctaaatatccataccgctattacaa 9959311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 4925098 - 4925166
Alignment:
Q  94 tatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 162  Q
    ||||||| |||| |||||||||||||||||| |||| ||||| |||||||||||||| ||| |||||||    
T  4925098 tatattacttcacacttttcaattatttaaaccactcaactacattttttaaatatccatatcactctt 4925166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 23089424 - 23089325
Alignment:
Q  61 atggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    |||||| |||||||||| |||||  |||||  ||||||||||||| | ||| ||||||||||||||||| | | | |||||||||||||  |||||||||    
T  23089424 atggatggtataaatggatcccatataatatattatattatttcacattttccaattatttaaatcactcatccacattttttaaatattcataccactc 23089325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 14913466 - 14913556
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccac 158  Q
    |||||||||||||  ||  ||||| ||||||||||| | ||||||||||||||||||  ||| ||||||||||| |||||||  |||||||    
T  14913466 gtataaatgggtcatactaaatacattatattattttacacttttcaattatttaaactactaaactatattttctaaatattcataccac 14913556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 34769661 - 34769571
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccac 158  Q
    ||||||| ||||||||| |||||| ||||||||  ||| ||||  |||||||||||| || | ||||| |||||||||||||| |||||||    
T  34769661 gtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccattcaactacattttttaaatatccataccac 34769571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 14947660 - 14947745
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaa 124  Q
    |||||||||||||| ||   | || ||| |||||||||| |||||| ||||| ||||||||| || ||||||||||||||||||||    
T  14947660 cacccacatccatgtcatccatatagatggtataaatggatcccacataatattttatattactttatacttttcaattatttaaa 14947745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 16280927 - 16280982
Alignment:
Q  94 tatattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 149  Q
    ||||||| |||| |||||||||||||| |||||||  ||||||||||| |||||||    
T  16280927 tatattacttcacacttttcaattattcaaatcacacaactatattttctaaatat 16280982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 160
Target Start/End: Original strand, 1995577 - 1995674
Alignment:
Q  63 ggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    |||| ||||||||||||||||| |||||| |||||||| |||| ||||  |||||||||||| |||||||||| ||||| |||||||| |||||||||    
T  1995577 ggatggtataaatgggtcccacataatacattatattacttcacacttcccaattatttaaaccacttaactacattttctaaatatccataccactc 1995674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 15877734 - 15877855
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 138  Q
    ||||| ||||||| ||||  | |||| | ||||||||||||||||| |||||| |||||||| |||| | ||||| |||||||||| |||| ||||||||    
T  15877734 cacccccatccataccacccatatgggtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaaccactcaactatat 15877833  T
Q  139 tttttaaatatcaataccactc 160  Q
    ||| |||||||| |||||||||    
T  15877834 tttctaaatatccataccactc 15877855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 40793167 - 40793276
Alignment:
Q  57 ttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatacc 156  Q
    |||||||| | |||||||||| | |||||||||||||||||||| |||  |||||||||||||||||| |||| ||||| ||||| |||||||  ||| |    
T  40793167 ttacatgggtggtataaatggattccacgtaatactttatattacttctcacttttcaattatttaaaccactcaactacattttataaatattcatatc 40793266  T
Q  157 actcttacaa 166  Q
    ||||||||||    
T  40793267 actcttacaa 40793276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 35846164 - 35846259
Alignment:
Q  70 ataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactcttacaa 166  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||||||||| || | ||||| ||||| ||||||||  ||||||||||||||    
T  35846164 ataaatgggtctcacgtaatactttatattattttacacttttcaattatttaaaccattcaactacattttctaaatatc-ctaccactcttacaa 35846259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 36177332 - 36177214
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    |||||| |||||||| || |||||| ||||||||||||||||| |||||  |||||||| |||| ||||| ||||||||| || |||| | ||| |||||    
T  36177332 ccacattcatgccacctatatggatggtataaatgggtcccacataatagattatattacttcacactttccaattatttgaaccactcatctacatttt 36177233  T
Q  142 ttaaatatcaataccactc 160  Q
    ||||||||  |||||||||    
T  36177232 ttaaatattcataccactc 36177214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 35424138 - 35424228
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccac 158  Q
    ||||||||||||| ||| |||||| |||||||| |||| | |||||||||||||||| |||| ||||| ||||| |||||||| |||||||    
T  35424138 gtataaatgggtctcacataatacattatattacttcacatttttcaattatttaaaccactcaactacattttctaaatatccataccac 35424228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 52313860 - 52313981
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 138  Q
    ||||||||||||||||||  | |||| | ||||||||||| ||||| || ||| |||||||| || | |||||  | ||||||||| |||| ||||| ||    
T  52313860 cacccacatccatgccacccaaatgggtggtataaatgggacccacatattacattatattactttacactttctagttatttaaaccactcaactacat 52313959  T
Q  139 tttttaaatatcaataccactc 160  Q
    ||| |||||||| |||||||||    
T  52313960 tttctaaatatccataccactc 52313981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 53464270 - 53464391
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 138  Q
    ||||||||||||||||||  | |||| | ||||||||||| ||||| || ||| |||||||| || | |||||  | ||||||||| |||| ||||| ||    
T  53464270 cacccacatccatgccacccaaatgggtggtataaatgggacccacatattacattatattactttacactttctagttatttaaaccactcaactacat 53464369  T
Q  139 tttttaaatatcaataccactc 160  Q
    ||| |||||||| |||||||||    
T  53464370 tttctaaatatccataccactc 53464391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 35496088 - 35496207
Alignment:
Q  43 cacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttt 142  Q
    ||||||| |||||| || |||  | |||||||||||||| || |||||  |||||||| |||| |||| |||||||||||||||| | ||||| ||||||    
T  35496088 cacatccttgccacctatatgagtggtataaatgggtcctacataatatattatattacttcacacttctcaattatttaaatcattcaactacattttt 35496187  T
Q  143 taaatatcaataccactctt 162  Q
    | ||| || |||| ||||||    
T  35496188 ttaatttccatactactctt 35496207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 4489965 - 4489847
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    ||||||||||| |||||| |||||| ||||||||||| | ||  |||||  ||||||||||| |||  || |||||||||| | |||| || ||||||||    
T  4489965 ccacatccatgtcacttatatggatagtataaatgggacacatataatatattatattattttatatattccaattatttataccactcaattatatttt 4489866  T
Q  142 ttaaatatcaataccactc 160  Q
     |||||||  |||||||||    
T  4489865 ataaatatttataccactc 4489847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 49786948 - 49787040
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    ||||||||||| | ||  |||||  |||||||||||| ||| | ||||||||||||| |||| ||||||||||| |||||||  |||||||||    
T  49786948 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactatattttataaatattcataccactc 49787040  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 20809642 - 20809697
Alignment:
Q  86 taatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    ||||| ||||||||| ||||||||||| |||||||||||  |||||||||||||||    
T  20809642 taatattttatattacttcatactttttaattatttaaacaacttaactatatttt 20809697  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 49644453 - 49644364
Alignment:
Q  71 taaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    |||||||  ||||| |||||  |||||||| |||| |||| ||||||||||||| |||| ||||| |||||| ||||||| || ||||||    
T  49644453 taaatggaccccacttaatatattatattacttcacacttctcaattatttaaaccactcaactacatttttcaaatatccatgccactc 49644364  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 45240899 - 45240856
Alignment:
Q  117 tatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||    
T  45240899 tatttaaaccacttaactatatttttcaaatatctataccactc 45240856  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 45266966 - 45266899
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaacta 135  Q
    ||||||||||||| |||  ||||| ||||||||||||| |||| ||||| ||||||| |||| |||||    
T  45266966 gtataaatgggtcacaccgaatacattatattatttcacacttctcaatcatttaaaccactaaacta 45266899  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 14898533 - 14898461
Alignment:
Q  87 aatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccact 159  Q
    ||||| ||||||||||| | | ||||||||| |||||| |||| ||||| ||||| |||||||  ||||||||    
T  14898533 aatacattatattattttacatttttcaattgtttaaaccactaaactacattttctaaatattcataccact 14898461  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 29096142 - 29096206
Alignment:
Q  96 tattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    ||||| |||| | |||||||||||||||| |||| ||||| ||| |||||||||  |||||||||    
T  29096142 tattacttcacatttttcaattatttaaaccactcaactacattatttaaatattcataccactc 29096206  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 7395546 - 7395455
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcactt 130  Q
    |||||| |||||||||||| | |||| | ||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||| |||||    
T  7395546 cacccatatccatgccactcatatgggtagtataaatgggtcccacctaatattttatattacttcacacttttcaattatttaaaccactt 7395455  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 162
Target Start/End: Original strand, 9104547 - 9104670
Alignment:
Q  39 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 138  Q
    |||| ||||||||  |||| | |||| | ||||||||||||| ||  ||||| |||||||||||||| | || ||||||||||||| |||| ||||| ||    
T  9104547 cacctacatccatctcactcatatgggtggtataaatgggtctcatctaatattttatattatttcacaattctcaattatttaaaccactcaactacat 9104646  T
Q  139 tttttaaatatcaataccactctt 162  Q
    |||||||||||| |||||||||||    
T  9104647 tttttaaatatctataccactctt 9104670  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 32914551 - 32914457
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttt-taaatatcaataccactct 161  Q
    ||||||||||||||||  ||||| ||||||||| |||| |||||||||||||||||| |||| ||||| |||||| |||||||| ||||||||||    
T  32914551 gtataaatgggtcccatataatattttatattacttcacacttttcaattatttaaaccactcaactacatttttctaaatatccataccactct 32914457  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 6858971 - 6859088
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    |||||||||| ||||  | |||| | ||||||||||||||||||||||||  ||||||| |||| ||||  |||||||||||| |||| |||||||||||    
T  6858971 ccacatccataccacccatatgggtggtataaatgggtcccacgtaatacaatatattacttcacacttcccaattatttaaaccactaaactatatttt 6859070  T
Q  142 ttaaatatcaataccact 159  Q
     |||||||| || |||||    
T  6859071 ctaaatatccatgccact 6859088  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 18565832 - 18565740
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    ||||||||||||| ||  |||||| |||||||| ||   |||| |||||||||||||| ||| ||||| |||||||||||||| |||||||||    
T  18565832 gtataaatgggtctcatataatacattatattactttcgacttctcaattatttaaatgactcaactacattttttaaatatccataccactc 18565740  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 39375775 - 39375711
Alignment:
Q  93 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatacca 157  Q
    |||||||| |||||| ||| |||||||||||| |||| |||||||||||||||||||| ||||||    
T  39375775 ttatattacttcatattttccaattatttaaaccactcaactatattttttaaatatccatacca 39375711  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 3739980 - 3739897
Alignment:
Q  44 acatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatca 127  Q
    |||||||  ||| ||| |||||| |||||||| |||| ||| |||||| ||||||||||| ||| |||||||||||||||||||    
T  3739980 acatccacaccatttatatggatggtataaataggtctcacataatacattatattattttatatttttcaattatttaaatca 3739897  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 14657603 - 14657523
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 149  Q
    |||||||||| || ||| |||||| ||||||||||||| ||||| |||||||||||| |||| ||||| ||||| |||||||    
T  14657603 gtataaatgg-tcacacataatacattatattatttcacactttccaattatttaaaccactcaactacattttctaaatat 14657523  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 8443344 - 8443224
Alignment:
Q  40 acccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatt 139  Q
    |||||||||||| ||||||| ||| || |||||||| |  ||||| ||||  |||||| ||||    |||||  |||||||||||  ||| || ||||||    
T  8443344 acccacatccataccacttatatgaatggtataaatagaccccacttaattttttataatattattcactttctaattatttaaactactcaattatatt 8443245  T
Q  140 ttttaaatatcaataccactc 160  Q
    |||||||||||||||| ||||    
T  8443244 ttttaaatatcaatactactc 8443224  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 8320502 - 8320451
Alignment:
Q  92 tttatattatttcatacttttcaattatttaaatcacttaactatatttttt 143  Q
    ||||||||| ||||| | |||||||||||||||| ||| |||||||||||||    
T  8320502 tttatattacttcattcatttcaattatttaaataactcaactatatttttt 8320451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 8322239 - 8322172
Alignment:
Q  93 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    |||||||| |||| |||||||||||||||||| |||| || || |||||| ||||||  |||||||||    
T  8322239 ttatattacttcacacttttcaattatttaaaccactcaattacatttttcaaatattcataccactc 8322172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 38610036 - 38609917
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    |||||||||| |||| || || ||| |||||||||| || |||  ||||  ||||||||||| | |||||   |||||||||| |||| || ||||||||    
T  38610036 ccacatccataccacctatattgatggtataaatggatctcactgaatatattatattattttacactttcttattatttaaaccactcaattatatttt 38609937  T
Q  142 ttaaatatcaataccactct 161  Q
     |||||||| |||| |||||    
T  38609936 ctaaatatccatactactct 38609917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 40095883 - 40095791
Alignment:
Q  68 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 160  Q
    ||||||||||  ||||  |||||  |||||||| || | |||| |||||||||||||  ||| ||||| |||||||||||||  |||||||||    
T  40095883 gtataaatggaccccatctaatatattatattactttacacttctcaattatttaaactactcaactacattttttaaatattcataccactc 40095791  T

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Target: scaffold0015 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 56706 - 56588
Alignment:
Q  42 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 141  Q
    ||||||||||||||   | |||||| ||||||||||| ||||| |||||  |||||||| || | |||| ||||||||||||| |||| ||||| |||||    
T  56706 ccacatccatgccatccaaatggatggtataaatgggacccacataatatattatattactttacacttctcaattatttaaaccactcaactacatttt 56607  T
Q  142 ttaaatatcaataccactc 160  Q
     |||||||| |||||||||    
T  56606 ctaaatatccataccactc 56588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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