View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21517_low_3 (Length: 453)
Name: NF21517_low_3
Description: NF21517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21517_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 171 - 438
Target Start/End: Original strand, 11379124 - 11379394
Alignment:
| Q |
171 |
tgtgaagtgtcatcttctgatgtcaagaaagcttttacattactcacataaatatcctaaaacatctgaatttctagtaaataaactcataatacaagac |
270 |
Q |
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| T |
11379124 |
tgtgaagtgtcatct---gatgtcaagagagcttttacattactcacataaatatcctaaaacatctgaatttcaagtaaataaactcataatacaagac |
11379220 |
T |
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| Q |
271 |
ttggattgccttgatctatatttttctttttgccttgtaaattatcaaaacataattatatt------cacatgcacactagttcatgtaattttacacc |
364 |
Q |
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| T |
11379221 |
ttggattgccttgatctatatttttctttttgccttgtaaattatcaaaacataattatattcacatgcacatgcacactagttcatgtaattttacacc |
11379320 |
T |
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| Q |
365 |
atctccaaattcttcactctagtaaaaaagttggttgtgtttgaagcttctttatctttctcctttttgctctg |
438 |
Q |
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| T |
11379321 |
atctccaaattcttcactctagtaaaaaagttggttgtgtttgaagcttctttatctttctcctgtttgctctg |
11379394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 11378966 - 11379061
Alignment:
| Q |
18 |
aaaatgatcatatgttaagatagattctatccaaagagagttttgctcatctttctcatagtttgcatttggaattttgaaaaggtttttagttgc |
113 |
Q |
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| T |
11378966 |
aaaatgatcatatgttaagatagattctatccgaagagagttttgctcatctttctcatagtttgcatttggaattttgaaaaggtttttagttgc |
11379061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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