View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21517_low_6 (Length: 293)
Name: NF21517_low_6
Description: NF21517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21517_low_6 |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 92 - 278
Target Start/End: Complemental strand, 38177376 - 38177190
Alignment:
| Q |
92 |
aaattggaattgggatttgattgcagccatttttaatgaacaagataggaaggctatatccaaactggtgctgttgcatcgagatagagaggacaagcgc |
191 |
Q |
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| T |
38177376 |
aaattggaattgggatttgattgcagccatttttaatgaacaagataggaaggctatatccaaactggtgctgttgcatcgagatagagaggacaagcgc |
38177277 |
T |
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| Q |
192 |
atatggaaatttaatagtcagggagtttatacggtaaagtccgcatatagatatgccatggaaacacttgttgatagtgaagaatat |
278 |
Q |
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| T |
38177276 |
atatggaaatttaatagtcagggagtttatacggtaaagtccgcatatagatatgccatggaaacacttgttgatagtgaagaatat |
38177190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 267
Target Start/End: Original strand, 42414256 - 42414428
Alignment:
| Q |
96 |
tggaattgggatttgattgcagccatttttaatgaacaagataggaaggctatatccaaactggtgctgttgcatcgagatagagaggacaagcgcatat |
195 |
Q |
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| T |
42414256 |
tggaattgggagctgattgcaggaattttcaatgagcaagatcgagaggctgtatcaaaattggtgctgctgaaccgagatagggatgataagctcatct |
42414355 |
T |
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| Q |
196 |
ggaaatttaatagtcagggagtttatacggtaaagtccgcatatagat-atgccatggaaacacttgttgata |
267 |
Q |
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| T |
42414356 |
ggaagttcaataatcaaggaaactacacagtaaaatcggcctataggtaatgctatggaaacacttgttgata |
42414428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 18978405 - 18978141
Alignment:
| Q |
2 |
gtggctgagggaggatgaaaattcgtatgtctctagtgaaaaaattcaaggcatggaaagaatgaaggtagcagatttgatgagtggagaaaattggaat |
101 |
Q |
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| T |
18978405 |
gtggctaagggaagatgagaattcgtatgttacaagcgaaaaa-tccaaggtttggaaaatatgaaggttgcagatttgatgagtggagaaagctggaat |
18978307 |
T |
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| Q |
102 |
tgggatttgattgcagccatttttaatgaacaagataggaaggctatatccaaactggtgctgttgcatcgagatagagaggacaagcgcatatggaaat |
201 |
Q |
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| T |
18978306 |
tgggggatgatagcagggatttttaatgatcatgacaggaaagcgatatctaatttagcattactgaaccgggatggggaagataggctcatttggaagt |
18978207 |
T |
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| Q |
202 |
ttaatagtcagggagtttatacggtaaagtccgcatatagatatgccatggaaacacttgttgata |
267 |
Q |
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| T |
18978206 |
ttaatcgtcatggaaattatacggtaaggtcggcatatagatatgcaatggaaacacttgtggata |
18978141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 34211722 - 34211808
Alignment:
| Q |
65 |
gaaggtagcagatttgatgagtggagaaaattggaattgggatttgattgcagccatttttaatgaacaagataggaaggctatatc |
151 |
Q |
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| T |
34211722 |
gaaggttgcagatttgatgagtggagaaagctggaattgggggatgatagcagggatttttaatgatcatgataggaaagcgatatc |
34211808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 34211875 - 34211924
Alignment:
| Q |
218 |
ttatacggtaaagtccgcatatagatatgccatggaaacacttgttgata |
267 |
Q |
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| T |
34211875 |
ttatacggtaaggtcggcatatagatatgcaatggaaacacttgtggata |
34211924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 267
Target Start/End: Original strand, 14214 - 14385
Alignment:
| Q |
96 |
tggaattgggatttgattgcagccatttttaatgaacaagataggaaggctatatccaaactggtgctgttgcatcgagatagagaggacaagcgcatat |
195 |
Q |
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| T |
14214 |
tggaattggaagctgattgcaggaattttcaatgagcaagatcgagaggctatatcgaaattggtgctgctgaaccgagatagggatgataagctcatct |
14313 |
T |
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| Q |
196 |
ggaaatttaatagtcagggagtttatacggtaaagtccgcatatagatatgccatggaaacacttgttgata |
267 |
Q |
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| T |
14314 |
ggaagttcaataatcaaggaaactacacagtaaaatcggcctataggtatgctatggaaacacttgttgata |
14385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 8619349 - 8619277
Alignment:
| Q |
195 |
tggaaatttaatagtcagggagtttatacggtaaagtccgcatatagatatgccatggaaacacttgttgata |
267 |
Q |
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| T |
8619349 |
tggaagtttaatcgtcatgaaatttatacggtaaggtcggcatatagatatgcaatgaaaacacttgtggata |
8619277 |
T |
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