View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21518_high_1 (Length: 286)
Name: NF21518_high_1
Description: NF21518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21518_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 41 - 269
Target Start/End: Original strand, 44467243 - 44467492
Alignment:
| Q |
41 |
gaagccatacaatttattaatatattttttaaaagagtatatagtatagtgttagcatttcatggtttagttaaatatt------------tctaatgct |
128 |
Q |
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| T |
44467243 |
gaagacatacaatttattaatatattttttaaaagagtatatagtatagtgttagcatttcatggtttagttaaatattgctcctggcctttctaatgct |
44467342 |
T |
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| Q |
129 |
cattctattctcttgaagcacaaaaacatgaaaactcttctaaccttaatcttcacattctc---------catcatcatcgttgccttcacacatgcaa |
219 |
Q |
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| T |
44467343 |
cattctattctcttgaagcacaaaaacatgaaaactcttctaaccttaatcttcacattctccatcatcatcatcatcatcgttgccttcacacatgcaa |
44467442 |
T |
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| Q |
220 |
caccaacattgatcattcgcactcaacctcaaatgaaccaatcatccatg |
269 |
Q |
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| T |
44467443 |
caccaacattgatcattcgcactcaacctcaaatgaaccaatcatccatg |
44467492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 44467196 - 44467235
Alignment:
| Q |
13 |
gcaaaggtattagtgattacatttccatgaagccatacaa |
52 |
Q |
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| T |
44467196 |
gcaaaggtattagtgattacatttccatgaagccatacaa |
44467235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 44474457 - 44474544
Alignment:
| Q |
171 |
accttaatcttcacattctccatcatcatcgttgccttcacacatgcaacaccaacattgatcattcgcactcaacctcaaatgaaccaat |
261 |
Q |
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| T |
44474457 |
accttaatcttcacattct---tcatcgttgctgccttcacaaatgcaacaccatcattggtctctcgctctcaacttcaaatgaaccaat |
44474544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 44488783 - 44488851
Alignment:
| Q |
156 |
atgaaaactcttctaaccttaatcttcacattctccatcatcatcgttgccttcacacatgcaacaccaacattg |
230 |
Q |
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| T |
44488783 |
atgaaaactctt---accttaatcttcacattctc---catcattgttgccttctcacatgcagcaccaacattg |
44488851 |
T |
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