View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21518_high_5 (Length: 227)
Name: NF21518_high_5
Description: NF21518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21518_high_5 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 41922488 - 41922702
Alignment:
| Q |
7 |
aaaaatctacaacacattgaactctgggacaagaaaatatcaaacaaaggtgctgctgttcttaatatatacgttccctaagttaaaccatctaaatctt |
106 |
Q |
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| T |
41922488 |
aaaaatctacaacacattgaactctgggacagtaaaatatcaaaccaaggtgctgctattctta----atacgttccccaagttagcccatttgaatctt |
41922583 |
T |
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| Q |
107 |
gattggactagtgtcacaaaattgcttgatataacatctcttgaatgccacaacatatgagtaattacactgttgactctattgtcaaagatggtaaagc |
206 |
Q |
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| T |
41922584 |
gattggactaacgtcacaaaattgcctgatttaacatctcttgaatgcctcaac--atgagtaattgtactattgattctattctcaaagatggtaaagc |
41922681 |
T |
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| Q |
207 |
acctttgacaaagattatttt |
227 |
Q |
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| T |
41922682 |
tcctttgacaaagcttatttt |
41922702 |
T |
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Target: scaffold0050 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 45100 - 45231
Alignment:
| Q |
7 |
aaaaatctacaacacattgaactctgggacaagaaaatatcaaacaaaggtgctgctgttcttaatatatacgttccctaagttaaaccatctaaatctt |
106 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45100 |
aaaaatctacaacacattgaactctgggacattaaaatatcaaacaaaggtgcttctgttcttaatat----gttccctaagttaaaccatctaaatctt |
45195 |
T |
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| Q |
107 |
gattggactagtgtcacaaaattgcttgatataaca |
142 |
Q |
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| T |
45196 |
gattggactagagtcacaaaatagcttgatataaca |
45231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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