View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21518_low_1 (Length: 294)
Name: NF21518_low_1
Description: NF21518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21518_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 38 - 280
Target Start/End: Original strand, 52113627 - 52113857
Alignment:
| Q |
38 |
gaaacgatgctgagcaagaaattcttgagggaaggtgaaacagtagcagcttcagccacatcaggagaaatcattgaagctgtcaatgcagctgcagtta |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52113627 |
gaaacgatgctgagcaagaaattcttgagggaaggtgaaacagtagcagcttcagccacatcaggagaaatcattgaagctgtcaatgcagctgcagtta |
52113726 |
T |
|
| Q |
138 |
aacctgtcacaattttctctttcaaggatgctttcactacaaaccttgcgttatggtttgatgctgccacagactttgatggcttcagagtcaatggtgc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52113727 |
aacctgtcacaattttctctttcaaggatgctttcactacaaaccttgc------------tgctgccacagactttgatggcttcagagtcaatggtgc |
52113814 |
T |
|
| Q |
238 |
cttcaagaatgcttgagaggttggtgcctctagcttcttgctg |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52113815 |
cttcaagaatgcttgagaggttggtgcctctagcttcttgctg |
52113857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 18100368 - 18100289
Alignment:
| Q |
44 |
atgctgagcaagaaattcttgagggaaggtgaaacagtagcagcttcagccacatcaggagaaatcattgaagctgtcaatgc |
126 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| || |||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
18100368 |
atgctgagcaagaagttcttgagagaaggtgaaac---ggccgcttcagccacatcaggaaccaccattgaagctgtcaatgc |
18100289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University