View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21519_high_8 (Length: 238)
Name: NF21519_high_8
Description: NF21519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21519_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37165064 - 37165285
Alignment:
| Q |
1 |
ttcgatgcctcaagttatgaagggaatgctgatctttgtggcaaaccacttgacaaaaaatgtccaagagatgaagttgcacctcagaaaccagaaacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37165064 |
ttcgatgcctcaagttatgaagggaatgctgatctttgtggcaaaccacttgacaaaaaatgtcctagagatgaagttgcacctcagaaaccagaaacac |
37165163 |
T |
|
| Q |
101 |
atgaagaaagtagtcaagaagataaaaggccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggatcattgtttcttag |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37165164 |
atgaagaaagtagtcaagaagataaaaagccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggatcattgtttcttag |
37165263 |
T |
|
| Q |
201 |
ccgtaattggagacatacatat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37165264 |
ccgtaattggagacatacatat |
37165285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37132610 - 37132834
Alignment:
| Q |
1 |
ttcgatgcctcaagttatgaagggaatgctgatctttgtggcaaaccacttgacaaaaaatgtccaagagatgaag---ttgcacctcagaaaccagaaa |
97 |
Q |
| |
|
|||||||| ||||||||| |||| |||| |||||||||||| ||||||||||| |||| ||||||| ||||||||| |||||| ||| |||||||||| |
|
|
| T |
37132610 |
ttcgatgcttcaagttatcaaggcaatgttgatctttgtgggaaaccacttgaaaaaatatgtccaggagatgaagaagttgcacatcataaaccagaaa |
37132709 |
T |
|
| Q |
98 |
cacatgaagaaagtagtcaagaagataaaaggccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggatcattgtttct |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37132710 |
cacatgaagaaagtagtcaagaagataaaaagccaatttatttgagcgtgacattgggatttatcacaggattttggggcctatggggatcattgtttct |
37132809 |
T |
|
| Q |
198 |
tagccgtaattggagacatacatat |
222 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
37132810 |
tagccgtacttggagacatacatat |
37132834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37139696 - 37139920
Alignment:
| Q |
1 |
ttcgatgcctcaagttatgaagggaatgctgatctttgtggcaaaccacttgacaaaaaatgtccaagagatgaag---ttgcacctcagaaaccagaaa |
97 |
Q |
| |
|
|||||||| ||||||||| |||| |||| |||||||||||| |||||||| || |||| ||||||| ||||||||| |||||| ||| |||||||||| |
|
|
| T |
37139696 |
ttcgatgcttcaagttatcaaggcaatgttgatctttgtgggaaaccactcgaaaaaatatgtccaggagatgaagaagttgcacatcataaaccagaaa |
37139795 |
T |
|
| Q |
98 |
cacatgaagaaagtagtcaagaagataaaaggccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggatcattgtttct |
197 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
37139796 |
cacatgaagaaagaagtcaagaagataaaaaaccaatttatttgtgtgtgacattgggatttatgactggattttggggcctatggggatcattgtttct |
37139895 |
T |
|
| Q |
198 |
tagccgtaattggagacatacatat |
222 |
Q |
| |
|
|||||| |||||||||||| ||||| |
|
|
| T |
37139896 |
tagccgaaattggagacatgcatat |
37139920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35142806 - 35142585
Alignment:
| Q |
1 |
ttcgatgcctcaagttatgaagggaatgctgatctttgtggcaaaccacttgacaaaaaatgtccaagagatgaagttgcacctcagaaaccagaaacac |
100 |
Q |
| |
|
|||||||| || |||||| |||| |||| |||||||||| ||||||||||||||||| |||||| || |||||||||| || |||||||||||||| |
|
|
| T |
35142806 |
ttcgatgcatcgagttataaaggtaatgtcaatctttgtgggaaaccacttgacaaaaa-tgtccatatgaagaagttgcacatctgaaaccagaaacac |
35142708 |
T |
|
| Q |
101 |
atgaagaaagtagtcaagaagataaaagg-ccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggatcattgtttctta |
199 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| || ||||| || |||||||| |
|
|
| T |
35142707 |
atgaacaaagtagtcaagaagataaaaaaaccaatttatttgaatgtggcattgggatttatcacaggattttcgggactttggggctctttgtttctct |
35142608 |
T |
|
| Q |
200 |
gccgtaattggagacatacatat |
222 |
Q |
| |
|
||| |||||||||||| ||||| |
|
|
| T |
35142607 |
gccagaattggagacatgcatat |
35142585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 38749284 - 38749464
Alignment:
| Q |
5 |
atgcctcaagttatgaagggaatgctgatctttgtggcaaaccacttgacaaaaaatgtccaagagatgaagttgcacctcagaaaccagaaacacatga |
104 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| | ||| || ||||||||||||||| || |
|
|
| T |
38749284 |
atgcctcaaattatgaagggaatgttgatctttgtgagaaaccacttgacaaaaaatgtctaggagg----------cccgagaaaccagaaacaccaga |
38749373 |
T |
|
| Q |
105 |
agaaagtagtcaagaagataaaaggccaatttatttgagtgtggcattgggatttatcacaggattttggggcctat-ggggatcattgtt |
194 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
38749374 |
agaaagtagtccagaagataaaaaaccaatttatttgagtgtggcatcgggatttatcacaggattttggggactatgggggatcattgtt |
38749464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11242578 - 11242361
Alignment:
| Q |
1 |
ttcgatgcctcaagttatgaagggaatgctgatctttgtggcaaaccacttgacaaaaaatgtccaagagatgaag---ttgcacctcagaaaccagaaa |
97 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||||||| ||| |||||||||||||| | ||||| | |||||||| |||||||||| |||||||||| |
|
|
| T |
11242578 |
ttcgacgcctcaagttatgaaggaaatgttgatctttctgggaaaccacttgacaacatatgtcaagaagatgaagaaattgcacctcaaaaaccagaaa |
11242479 |
T |
|
| Q |
98 |
cacatgaagaaagtagtcaagaagataaaaggccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggatcattgtttct |
197 |
Q |
| |
|
| |||||||||||||| |||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| | | |
|
|
| T |
11242478 |
cttttgaagaaagtagtccagaagatatgaattcaatttatttgagtgtggcattaggatttattacaggattttggggcctttggggatcattgctgtt |
11242379 |
T |
|
| Q |
198 |
tagccgtaattggagaca |
215 |
Q |
| |
|
|| ||| ||||||||||| |
|
|
| T |
11242378 |
tatccggaattggagaca |
11242361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 3022514 - 3022337
Alignment:
| Q |
5 |
atgcctcaagttatgaagggaatgctgatctttgtggcaaaccacttgacaaaaaatgtccaagagatga---agttgcacctcagaaaccagaaacaca |
101 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||||||| ||||| || |||||||||||| |
|
|
| T |
3022514 |
atgcctcaaattatgaagggaatgttgatctttgtgggaaaccacttgacaaaatatgtccaggagatgatgaagttgtgcccgagaaaccagaaa---- |
3022419 |
T |
|
| Q |
102 |
tgaagaaagtagtcaagaagataaaaggccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggatcatt |
191 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3022418 |
--------gtagtccagaagataaaaaaccaatttatttgagtgtggcattgggatttatcacaggattttggggactatggggatcatt |
3022337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University