View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21519_low_4 (Length: 295)
Name: NF21519_low_4
Description: NF21519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21519_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 8938462 - 8938743
Alignment:
| Q |
1 |
tgcaaatcgaaaaatttagtcttatctgactcacaaaattgtcttcccaggttctttttaacaaacaatttttcattattttatccttttcaatcagatt |
100 |
Q |
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| T |
8938462 |
tgcaaattgaaaaatttagtcttatctgactcacaaaactgtcttcccaggttctttttaacaaacaatttttcattattttatccttttcaatcagatt |
8938561 |
T |
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| Q |
101 |
cttccaacgccaacattactttctttaattgctcttcagttggagtacaccatctgaaaagctgggaccaaagaaaccctggtgtgcaagacatgctgtc |
200 |
Q |
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| T |
8938562 |
cttccaacgccaacattactttctttaattgctcttcagttggagtacaccatctgaaaagctgggaccaaagaaaccctggtgtgcaagacatgctgtc |
8938661 |
T |
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| Q |
201 |
ttgtccgatttatgctaccgattctaccgatagtgccgtcgaattggacttattaagctgtacaagaatgtttgataaagtt |
282 |
Q |
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| T |
8938662 |
ttgtccgatttatgctaccgattctaccgatagtgccgtcgaattggacttattaagctgcacaagaatgtttgataaagtt |
8938743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 8926039 - 8926320
Alignment:
| Q |
1 |
tgcaaatcgaaaaatttagtcttatctgactcacaaaattgtcttcccaggttctttttaacaaacaatttttcattattttatccttttcaatcagatt |
100 |
Q |
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| T |
8926039 |
tgcaaattgaaacacttagtcctatctgacccacaaaactgtcttcctagtctctttttaacaaacaatttttcattattttatccttttcaatcagatt |
8926138 |
T |
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| Q |
101 |
cttccaacgccaacattactttctttaattgctcttcagttggagtacaccatctgaaaagctgggaccaaagaaaccctggtgtgcaagacatgctgtc |
200 |
Q |
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| T |
8926139 |
tttcctacaacaacattactttctttaattgctcttcagttggagtacaccatctgaaaagctgggaccaaagaaaccctgatgttcaagacatgctgtc |
8926238 |
T |
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| Q |
201 |
ttgtccgatttatgctaccgattctaccgatagtgccgtcgaattggacttattaagctgtacaagaatgtttgataaagtt |
282 |
Q |
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||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
8926239 |
ttgtccgatttatgctaccgattctactgaaagtgtcgtcgaattggacttattaagctgcacaagaatgttcaataaagtt |
8926320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 282
Target Start/End: Original strand, 8961530 - 8961698
Alignment:
| Q |
111 |
caacattactttctttaattgctcttcagttggagtacaccatctgaaaagctgggaccaaagaaaccctggtgtgcaagacatgctgtcttgtccgatt |
210 |
Q |
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| T |
8961530 |
caacgttactttctttaattgctcttcagttgg---acaacatctcagaagctgggaacaaacaaaacccggtgcccaagacatgttatcttgtccaatt |
8961626 |
T |
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| Q |
211 |
tatgctaccgattctaccgatagtgccgtcgaattggacttattaagctgtacaagaatgtttgataaagtt |
282 |
Q |
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| T |
8961627 |
tatgttgctgatttatctgaaagtgtcatcgaattggacttattacgttgcaccagaatgtttgataaagtt |
8961698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 8961424 - 8961491
Alignment:
| Q |
23 |
tatctgactcacaaaattgtcttcccaggttctttttaacaaacaatttttcattattttatcctttt |
90 |
Q |
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| T |
8961424 |
tatctcacccacaaaattgtctttctagtatctttgtaacacacaatttttcactattttatcctttt |
8961491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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