View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21519_low_5 (Length: 281)
Name: NF21519_low_5
Description: NF21519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21519_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 16753677 - 16753756
Alignment:
| Q |
192 |
aatattgactattatcataaaaacatataacatagtcattttgcaagattttgaggtaataacttcattagtcgttcatc |
271 |
Q |
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| T |
16753677 |
aatattgactattatcataaaaacatataacatagtcattttacaagattttgaggcaataacttcattagtcgttcatc |
16753756 |
T |
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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 16753573 - 16753623
Alignment:
| Q |
88 |
catcttgtacataattggagtaattctttcatagttttgttggtctaatga |
138 |
Q |
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| T |
16753573 |
catcttgtacataattggagtaattttttcatagttttgttggtctaatga |
16753623 |
T |
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