View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2151_low_1 (Length: 697)
Name: NF2151_low_1
Description: NF2151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2151_low_1 |
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| [»] scaffold1532 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 12 - 682
Target Start/End: Complemental strand, 48477011 - 48476336
Alignment:
| Q |
12 |
gtgagatgaatcatttgtggtaatctaatttaattttagcttgttcaacaataaaaaaggatcaaacaagctgaaggtcggaaaattttaaaatttcttc |
111 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48477011 |
gtgagatgaatcatttgtggtactctaatttaattttagcttgttcaacaataagaaaggatcaaacaagctgaaggtcggaaaattttaaaatttcttc |
48476912 |
T |
|
| Q |
112 |
nnnnnnnnnnnnnnnnnnnn--catttcaagagacatgtgactatgaccagtaaccgactattatttatgatttcaaatttgaatggtaaattttaaaat |
209 |
Q |
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| T |
48476911 |
tcttttttattttttattttttcatttcaagagacatgtgactatgaccagtaaccgactattatttatcatttcaaatttgaatggtaaattttaaaat |
48476812 |
T |
|
| Q |
210 |
ttaccatgtaagaatgatgatggaagatnnnnnnn-gtatgtgcttatttttaaaaatttagttattatttaatgggataaaatggacaactaacnnnnn |
308 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| |
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| T |
48476811 |
ttaccatgtaagaatgatgatggaagatacaaaaaagtatgtgcttattttaaaaattttagttatt---taatgggataaaatggacaactaatttttt |
48476715 |
T |
|
| Q |
309 |
nnnn-atcggatagtctagtgtctaaaactcaacccttgcatatcgtattgtctctatcaactgaattatgctcacgaagagataaaattagtagtttaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48476714 |
tttttatcggatagtctagtgtctaaaactcaacccttgtatatcgtattgtctctatcaactgaattatgctcacgaagagataaaattagtagtttaa |
48476615 |
T |
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| Q |
408 |
gtaaatactaaaataaagagaaaaattactacattgaaaacttttt----gtgtgtgtattaccttaaaacattatgcaccctgaccctgggtcctggat |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48476614 |
gtaaatactaaaataaagagaaaaattactacattgaaaactttttttgtgtgtgtgtattaccttaaaacattatgcaccctgaccctgggtcctggat |
48476515 |
T |
|
| Q |
504 |
catgactgttggttgttgtatgttgcacctgaatataagctttttgaataaagttactgcaatcactttgctaatctaaaggtccaacaatggaattttc |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48476514 |
catgactgttggttgttgtatgttgcacctgaatataagctttttgaataaagtaactgcaatcactttgctaatctaaaggtccaacaatggaattttc |
48476415 |
T |
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| Q |
604 |
aaattgaacctttttctcttggttcatcatattagatgagtctaatttttaagcttagcatgatcttgaggagcaaggt |
682 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48476414 |
aaattgaacctttttctcttggttcatcatattagatgagtctaatttttaagcttagcatgatcttgaggagcaaggt |
48476336 |
T |
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Back To:
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Target: scaffold1532 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold1532
Description:
Target: scaffold1532; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 1247 - 1307
Alignment:
| Q |
390 |
ataaaattagtagtttaagtaaatactaaaataaagagaaaaattactacattgaaaactt |
450 |
Q |
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||||| |||||||||||| ||||| |||||||| ||||||| |||||||| ||| ||||| |
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| T |
1247 |
ataaagttagtagtttaaataaatggtaaaataaggagaaaagttactacaatgataactt |
1307 |
T |
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