View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2151_low_10 (Length: 209)
Name: NF2151_low_10
Description: NF2151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2151_low_10 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 51808070 - 51807890
Alignment:
| Q |
12 |
gagatgaagagcagaccagctagaggaccagatgtggtggatagataacactgcgaaacttttgatagcctctctccttctgtcacactaaaatattgcg |
111 |
Q |
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| T |
51808070 |
gagatgaagagcagaccagctagaggaccagatgtggtggatagataacactgtgaaacttttgatagcctctctccttctgtcacactaaaatattgcg |
51807971 |
T |
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| Q |
112 |
taaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttg |
192 |
Q |
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| T |
51807970 |
taaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagttctctttattgttttagatatgtttg |
51807890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 51804117 - 51803937
Alignment:
| Q |
12 |
gagatgaagagcagaccagctagaggaccagatgtggtggatagataacactgcgaaacttttgatagcctctctccttctgtcacactaaaatattgcg |
111 |
Q |
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| T |
51804117 |
gagatgaagaggagaccagatagaggaccggatgtggtggaaagataacactgcgaaacttttgatagcctctctccttctctcacactaaaatactgcc |
51804018 |
T |
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| Q |
112 |
taaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttg |
192 |
Q |
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| T |
51804017 |
taaacattttctccactccacccatttgaagaatttgagcccctaagttcaacgtcctctttattgttttagatatgtttg |
51803937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 51772495 - 51772315
Alignment:
| Q |
12 |
gagatgaagagcagaccagctagaggaccagatgtggtggatagataacactgcgaaacttttgatagcctctctccttctgtcacactaaaatattgcg |
111 |
Q |
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| T |
51772495 |
gagatgaagaggagaccggctagagggccagatgtggtggatagataacactgcgaaattttcaacaggctctcgtcctcactcacactaaaataccgca |
51772396 |
T |
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| Q |
112 |
taaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttg |
192 |
Q |
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| T |
51772395 |
taaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttg |
51772315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 51780351 - 51780181
Alignment:
| Q |
12 |
gagatgaagagcagaccagctagaggaccagatgtggtggatagataacactgcgaaacttttgatagcctctctccttctgtcacactaaaatattgcg |
111 |
Q |
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| T |
51780351 |
gagatgaagaggaggccagctagagggccagatgtggtggaaagataacagtgagaaactttcaaca----ctctc------tcacactaaaatagtgca |
51780262 |
T |
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| Q |
112 |
taaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttg |
192 |
Q |
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| T |
51780261 |
taaaaaatttatccactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttcagaaatgtttg |
51780181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 12196175 - 12196322
Alignment:
| Q |
15 |
atgaagagcagaccagctagaggaccagatgtggtggatagataacactgcgaaacttttgatagcctctctccttctgtcacactaaaatattgcgtaa |
114 |
Q |
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| T |
12196175 |
atgaagagtaggcctgctagaggaccagatgttgttgatagataacattgagatgcttttagtagcctctctccatcttttacactaaatagttgcatga |
12196274 |
T |
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| Q |
115 |
acactttctccactccacccatttgaagaatttgagcccctaagctca |
162 |
Q |
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| T |
12196275 |
acaccttttccactcctccaacttgaagaattctagctcctaagctca |
12196322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 6921 - 6823
Alignment:
| Q |
94 |
tcacactaaaatattgcgtaaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagtcctctttattgttttagatatgtttg |
192 |
Q |
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||||||||||||| ||| |||| | ||| ||||||||||||| || |||||||| ||||||||||||||| ||||| ||||||||| ||| ||||||| |
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| T |
6921 |
tcacactaaaatagtgcataaaaaatttatccactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttcagaaatgtttg |
6823 |
T |
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