View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2151_low_2 (Length: 474)
Name: NF2151_low_2
Description: NF2151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2151_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 47591321 - 47591601
Alignment:
| Q |
17 |
gaatcatggtaattggtaattctgctatgtatgtataatatctctttctcttcacttgattctctctctcaatcactcacccaatgcagtttactacact |
116 |
Q |
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| T |
47591321 |
gaatcatggtaattggtaattctgctatgtatgtataatatctctttctcttcacttgattctctctctcaatcactcactcaatgcagtttactacact |
47591420 |
T |
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| Q |
117 |
aactgacactgtagtacacatgcacacaaagccaactggcaaatattgatttcattcacataaagataaaataagaaggcgaaaggagtgagtaaaggga |
216 |
Q |
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| T |
47591421 |
aactgacactgtagtacacatgcacacaaagccaactggcaaatattgatttcattcacataaagataaaataagaaggcgaaaggagtgagtaaaggga |
47591520 |
T |
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| Q |
217 |
caaacagtttacaaattctagtgttattcgtttgtttctctctctctttttgccactttatgttatgttaaatgttaatca |
297 |
Q |
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| T |
47591521 |
caaacagtttacaaattctagtgtgattcgtttgtttctctctctctttttgcctctttatgttatgttaaatgttaatca |
47591601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 365 - 463
Target Start/End: Original strand, 47591669 - 47591767
Alignment:
| Q |
365 |
aaaacaaacacattaacaagcataagagaaagaaagaaaaagaaactctagttctataggtcctttaccactctacaacactagttttcattcattcat |
463 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47591669 |
aaaacaaacacattaacaagcataagagaaagaaaaaaaaagaaactctagttctataggtcctttaccactctacaacactagttttcattcattcat |
47591767 |
T |
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