View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2151_low_6 (Length: 239)
Name: NF2151_low_6
Description: NF2151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2151_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 5541534 - 5541741
Alignment:
| Q |
19 |
tatccagcaacacctttatactagctgtcagctcctcataaacaatcacctatccttcatgagagcattctagttgagccaagatatttgcacaaatatt |
118 |
Q |
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| T |
5541534 |
tatccagcaacacctttatactagctgtcagctcctcataaacaatcacctatccttcatgagagcattctagtttagccaagatatttgcacaaatatt |
5541633 |
T |
|
| Q |
119 |
tgcttttatatataaatgtatatttgcttcaaaggaagtgggaacctatcataatcaataatacagggccgcaattttctcatctcctctttgtggatga |
218 |
Q |
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| T |
5541634 |
tgcttttatgtataaatgtatatttgcttcaaaggaagtgggaacctatcagaatcaataatatcgggccacaattttctcatctcctctttgtagatga |
5541733 |
T |
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| Q |
219 |
cgtccttc |
226 |
Q |
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| |||||| |
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| T |
5541734 |
catccttc |
5541741 |
T |
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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 13599764 - 13599843
Alignment:
| Q |
147 |
tcaaaggaagtgggaacctatcataatcaataatacagggccgcaattttctcatctcctctttgtggatgacgtccttc |
226 |
Q |
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| T |
13599764 |
tcaaaggaagggggaacctatcagaatcaataacacagggccgcacctatctcatctcctctttacagatgacgtccttc |
13599843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 49149742 - 49149663
Alignment:
| Q |
147 |
tcaaaggaagtgggaacctatcataatcaataatacagggccgcaattttctcatctcctctttgtggatgacgtccttc |
226 |
Q |
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| T |
49149742 |
tcaaaggaagtgggaacctatcagaatcaataacacatgaccacatttttctcatctcctttttgcggatgacgtacttc |
49149663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 16769929 - 16769855
Alignment:
| Q |
152 |
ggaagtgggaacctatcataatcaataatacagggccgcaattttctcatctcctctttgtggatgacgtccttc |
226 |
Q |
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|||||||||||||||||| ||||||||| ||||| || || ||||||||||||| |||| ||||||||| |||| |
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| T |
16769929 |
ggaagtgggaacctatcagaatcaataacacaggaccacacctttctcatctcctttttgcggatgacgtacttc |
16769855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 23465530 - 23465562
Alignment:
| Q |
147 |
tcaaaggaagtgggaacctatcataatcaataa |
179 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
23465530 |
tcaaaggaagtgggaacctatcagaatcaataa |
23465562 |
T |
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