View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2151_low_9 (Length: 215)
Name: NF2151_low_9
Description: NF2151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2151_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 3e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 9475577 - 9475384
Alignment:
| Q |
15 |
ttcactggcttgctacagttcaagtaaattatgtattcgaaccaagatgcataatcaaatctgtatggatcctcgcggctgctattactgtaataacttg |
114 |
Q |
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| T |
9475577 |
ttcactggcttgctacagttcaagtaagttatgtattcgaaccaagatgcataatcaaatccgtatggatcctcgcgtttgctattactgtaataacttg |
9475478 |
T |
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| Q |
115 |
tgaaattggatttggttaagaaataacgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgta |
208 |
Q |
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| T |
9475477 |
tgaaattggatttggttaagaaataacgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgta |
9475384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 9307031 - 9306933
Alignment:
| Q |
104 |
gtaataacttgtgaaattggatttggttaagaaataacgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagtt |
202 |
Q |
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| T |
9307031 |
gtaagaacttgtgaaattggctgcggttaagaaatagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagtt |
9306933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 9359214 - 9359292
Alignment:
| Q |
109 |
aacttgtgaaattggatttggttaagaaataacgaggaatggagaagcaatcatcctcttgaattccaggatcaactag |
187 |
Q |
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| T |
9359214 |
aacttgtgaaattggatttagttaagaaatatggaggaatggaggagcaattaccctcttcaattactggatcaactag |
9359292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 8924722 - 8924795
Alignment:
| Q |
131 |
taagaaataacgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttat |
204 |
Q |
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| T |
8924722 |
taagtaatagcgaggaaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttat |
8924795 |
T |
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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 9168363 - 9168461
Alignment:
| Q |
101 |
actgtaataacttgtgaaattggatttggttaagaaataacgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtag |
200 |
Q |
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| T |
9168363 |
actgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatgg---tgcaatcaccttcttctattccaggatcaactactctgattgtgtag |
9168459 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 15912979 - 15912881
Alignment:
| Q |
104 |
gtaataacttgtgaaattggatttggttaagaaataacgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagtt |
202 |
Q |
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| T |
15912979 |
gtaaaaacttgagaagttggatgtggttaagaagtaacgaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagtt |
15912881 |
T |
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