View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21520_high_3 (Length: 427)
Name: NF21520_high_3
Description: NF21520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21520_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 42336088 - 42335683
Alignment:
| Q |
1 |
caaagcacaaactcagctctatgtttgaccaaagtaaacaaacttcaattccttactatattgccgttactatcaccatcttcattattattcaacctca |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42336088 |
caaagcacaaactcagctctatgtttgaccaaagtaaacaaacttcaattccttactatattgccgttactatcaccatcttcattattattcaacctca |
42335989 |
T |
|
| Q |
101 |
accataatttgtgtattaactcttaccaactcaacatacataaactgaaatattccttatacgcactcttgtgcttgcttgactcaaaggaagaatccca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
42335988 |
accataatttgtgtattaactcttaccaactcaacatacataaactgaaatattccttatacacactcttgtgcttgattgactcaaaggaagaatccca |
42335889 |
T |
|
| Q |
201 |
actgggaatnnnnnnngtaagaatatggaaccttctacatcttcagaaaagcagccaccaaaaggaagagttttgaaggagaagagagcaaagttttaca |
300 |
Q |
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|
||||| ||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42335888 |
actggtaataaaaaaagcaagaatatggaaccttctacatcttcagaaaagcagctaccaaaaggaagagttttgaaggagaagagagcaaagttttaca |
42335789 |
T |
|
| Q |
301 |
ttattcgaagatgcatagtcatgcttctctgttggaaggataaaggagacaaggaataataccggtaaaacactcgctcacttcaaagaacactgtttct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
42335788 |
ttattcgaagatgcatagtcatgcttctctgttggaaggataaaggagacaaggaataataccggtaaaacactcactcacttcaaagaacactgtttct |
42335689 |
T |
|
| Q |
401 |
actgtt |
406 |
Q |
| |
|
|||||| |
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|
| T |
42335688 |
actgtt |
42335683 |
T |
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