View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21520_low_1 (Length: 747)
Name: NF21520_low_1
Description: NF21520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21520_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 415 - 638
Target Start/End: Complemental strand, 45906603 - 45906380
Alignment:
| Q |
415 |
aacactttagtctgattgtttcttcatgggttggaaggtagaccacgaagcttgttcgctgatatctctttgtccgaaggaaaaacaaaaaggtcccttc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45906603 |
aacactttagtctgattgtttcttcatgggttggaaggtagaccacgaagcttgttcgctgatatctctttgtccgaaggaaaaacaaaaaggtcccttc |
45906504 |
T |
|
| Q |
515 |
cattactaaagcacgaaaaatatttaacaagttgtatagttttgtcatttgcaattgtattgtgaggaatgcaaaaaccctttgcatatcaagtggaaca |
614 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45906503 |
cattagtaaagcacgaaaaatatttaacaagttgtatagttttgtcatttgcaattgtattgtgagggatgcaaaaaccctttgcatatcaagtggaaca |
45906404 |
T |
|
| Q |
615 |
cttgtcaatttaactatgtataac |
638 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
45906403 |
cttgtcaatttaactatgtataac |
45906380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 237 - 384
Target Start/End: Complemental strand, 45906747 - 45906600
Alignment:
| Q |
237 |
tgagtggaccttgatatttaataattgttgagtatgtgcaagagtaggtgataaatggcatcaaatctgttattattgaaaactataaatgttagacatg |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45906747 |
tgagtggaccttgatatttaataattgttgagtatgtgcaagagtaagtgataaatggcatcaaatctgttattattgaaaactataaatgttagacatg |
45906648 |
T |
|
| Q |
337 |
cttaaaagtataaaaatcccaaactcttgcaatagtgtctttgaaaca |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45906647 |
cttaaaagtataaaaatcccaaactcttgcaatagtgtctttgaaaca |
45906600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 234 - 379
Target Start/End: Complemental strand, 43061690 - 43061545
Alignment:
| Q |
234 |
gaatgagtggaccttgatatttaataattgttgagtatgtgcaagagtaggtgataaatggcatcaaatctgttattattgaaaactataaatgtt-aga |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
43061690 |
gaatgagtggaccttgatatttaataattgttgagtatgtgcaagagtaggtgatagataacatcaaacctgttattattgaaaactataaatgttaaga |
43061591 |
T |
|
| Q |
333 |
catgcttaaaagtataaaaatcccaaactcttgcaatagtgtctttg |
379 |
Q |
| |
|
||| ||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
43061590 |
catactt-aaagtataaaaatcccaagctcttgcaatagtgtatttg |
43061545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 43061893 - 43061751
Alignment:
| Q |
24 |
gctcctccagctcgtgcctagtagaagctaatatgaagttttttgttt---tatatgtgttgttggatcagatttatatcgtgaacctcatttgatttgc |
120 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||| ||| | | ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43061893 |
gctcctccagcccgtgcctag---aagctaatatgaagttttttttttctttttttgtgttgttggatcagatttatatcatgaacctcatttgatttgc |
43061797 |
T |
|
| Q |
121 |
ttaattttagattccagttttgtgtagcaacattatattattgtctga |
168 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
43061796 |
ttaattttagattccag--ttgtgtagcaacattatgttattgtctga |
43061751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 537 - 732
Target Start/End: Original strand, 3978592 - 3978786
Alignment:
| Q |
537 |
tttaacaagttgtatagttttgtcatttgcaattgtattgtgaggaatgcaaaaaccctttgcatatcaagtggaacacttgtcaatttaactatgtata |
636 |
Q |
| |
|
||||||| |||| ||||||| |||| ||||||||| |||| ||| || |||||| || |||||||||||| || ||||||||||||||||| ||| |
|
|
| T |
3978592 |
tttaacaggttgaatagtttgctcatgtgcaattgtgttgtaaggggtggaaaaacactccgcatatcaagtgtgacccttgtcaatttaactatatatc |
3978691 |
T |
|
| Q |
637 |
accacagatactactattacaaaattgatcttatgcactccaaatttgtgtaactttgtttttaacggcactccttatcggaaactatctgggagc |
732 |
Q |
| |
|
| |||||| | ||||||| |||||||| ||||| ||||||| | | || || |||||||||| ||| |||||||||| || |||||||||||| |
|
|
| T |
3978692 |
atgacagatccatctattacgaaattgat-ttatgtactccaagtctttggaagtttgtttttaccggtactccttatctgagtctatctgggagc |
3978786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University