View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21520_low_2 (Length: 520)
Name: NF21520_low_2
Description: NF21520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21520_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 43781514 - 43781793
Alignment:
| Q |
18 |
gtggaaaggttattgcgtctgatttaagtcctgtggctgttgctgttgcaggttacaatgtgcaaaggtattctttgcaggttagaaattcaagctttca |
117 |
Q |
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| T |
43781514 |
gtggaaaggttattgggtctgatttaagtcctgtggctgttgctgttgcaggttacaatgtgcaaaggtattctttgcaggttagaaattcaagctttca |
43781613 |
T |
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| Q |
118 |
gcttccatggtttacattctcttttattgttcagtcaaagttatatatgtcgattttgtatctggagacgtggcagtgatgtggagtcaatatagattat |
217 |
Q |
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| T |
43781614 |
gcttccatggtttacattctcttttattgttcagtcaaagttatatatgtcgattttgtatctggagacgtggcagtgatgtggagtcaatatagattat |
43781713 |
T |
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| Q |
218 |
cacatcttcgttatcgtgtcaatgaatgttgactaccgtttgaacttaacagagggaccattttgattcatgtgttgcaa |
297 |
Q |
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| T |
43781714 |
cacatcttctttatcgtgtcaatgaatgttgactaccgtttgaacttaacagagggaccattttgattcatgtgttgcaa |
43781793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 321 - 514
Target Start/End: Original strand, 43781793 - 43781986
Alignment:
| Q |
321 |
aaaaatcaaggacaacattgaaatcgcctgaaatttattatctttgcttaatttttataaaacctctgcttataatttttataaatatactgaaactggt |
420 |
Q |
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| T |
43781793 |
aaaaatcaaggacaacattgaaatcgcctgaaatttactatctttgcttaatttttataaaacctctgcttataatttttataaatatactgaaactggt |
43781892 |
T |
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| Q |
421 |
aaagacaagtttccacctaccatatgatttaaattcttattatccaatttcacggtccatgtttttgtaaattttgcttatgcctttcatctca |
514 |
Q |
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| T |
43781893 |
aaagacaagtttccacctaccatatgatttaaattcttattatccaatttcacggtccatgtttttgtaaattttgcttatgcctttcatctca |
43781986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 407 - 510
Target Start/End: Original strand, 15957552 - 15957655
Alignment:
| Q |
407 |
atactgaaactggtaaagacaagtttccacctaccatatgatttaaattcttattatccaatttcacggtccatgtttttgtaaattttgcttatgcctt |
506 |
Q |
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| T |
15957552 |
atactgaaactggtaaagacaaatttccaactgccatatgaattaaattgcttttatccaatttcacggtccatgtttttgttaattttgcttatgcttt |
15957651 |
T |
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| Q |
507 |
tcat |
510 |
Q |
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|||| |
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| T |
15957652 |
tcat |
15957655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 15957144 - 15957281
Alignment:
| Q |
18 |
gtggaaaggttattgcgtctgatttaagtcctgtggctgttgctgttgcaggttacaatgtgcaaaggtattctttgcaggttagaaattcaagc--ttt |
115 |
Q |
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| T |
15957144 |
gtggaaaggttattgcgtccgatttaagtcatgtggctgttgctgttgc-ggttgcaatgtgcagaggtattgcttgcaggttagaaattcaagcctttt |
15957242 |
T |
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| Q |
116 |
cagcttccatggtttacattctcttttattgttcagtca |
154 |
Q |
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| T |
15957243 |
caacctccatgagttatattcttttttgttgttaagtca |
15957281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 335
Target Start/End: Original strand, 15957371 - 15957464
Alignment:
| Q |
242 |
aatgttgactaccgtttgaacttaacagagggaccattttgattcatgtgttgcaattttaggaatgatgctatttcgtaaaaatcaaggacaa |
335 |
Q |
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| T |
15957371 |
aatgttgtctaacatctgaacttaacaaagggaccaatttgattgatgtgttacattttcaggaacgaagctaatttgtagaagtcaaggacaa |
15957464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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