View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21520_low_4 (Length: 348)
Name: NF21520_low_4
Description: NF21520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21520_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 38827741 - 38828086
Alignment:
| Q |
1 |
tataacgtctcatccattttatttttattatcatatcatgattcttgagtcgaaaattttgagtgggaaagcaaaaaataaattacaaaaagaccaatta |
100 |
Q |
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| T |
38827741 |
tataacgtctcatccattttatttttattatcatatcatcattcttgagtcgaaaattttgagtgggaaagcaaaaaataaattacaaaaagaccaatta |
38827840 |
T |
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| Q |
101 |
tgcgagcaagtgaaaatagaagaacaccgtttcaatgtttggattaactccacaatatagaactagaatgtattcataccatcccatatgggacattgca |
200 |
Q |
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| T |
38827841 |
tgtgagcaagtgaaaatagaagaacaccgttataatgtttcaattaactccacaatatagaactagaatgtattcataccatcccatatgggacattgca |
38827940 |
T |
|
| Q |
201 |
tatggaagactgagaacaccagcaccaaccatggctgttagattgtggaacgctgaataccaccatttggcatttctagaagcagttacaggaagccaat |
300 |
Q |
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| T |
38827941 |
tatggaagactgagaacaccagcaccaaccatggctgttagattgtggaacgccgaataccaccatttggcatttctagaagcagttacaggaagccaat |
38828040 |
T |
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| Q |
301 |
catcaatggccttttgtttggcatcagcttgattttcttcgacatc |
346 |
Q |
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| T |
38828041 |
catcaatggccttttgtttggcatcagcttgatttttttctacatc |
38828086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 318
Target Start/End: Complemental strand, 43851860 - 43851744
Alignment:
| Q |
202 |
atggaagactgagaacaccagcaccaaccatggctgttagattgtggaacgctgaataccaccatttggcatttctagaagcagttacaggaagccaatc |
301 |
Q |
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| T |
43851860 |
atggaagactcaagacaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcattccttgaagaagttatgggaagccaatc |
43851761 |
T |
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| Q |
302 |
atcaatggccttttgtt |
318 |
Q |
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| T |
43851760 |
atctattgccttttgtt |
43851744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 41383014 - 41383078
Alignment:
| Q |
213 |
agaacaccagcaccaaccatggctgttagattgtggaacgctgaataccaccatttggcatttct |
277 |
Q |
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| T |
41383014 |
agaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttct |
41383078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 14199139 - 14199218
Alignment:
| Q |
198 |
gcatatggaagactgagaacaccagcaccaaccatggctgttagattgtggaacgctgaataccaccatttggcatttct |
277 |
Q |
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| T |
14199139 |
gcataagggagactaagaacaccagctccaaccatggcagtaacattgtggaatgcagaataccaccattttgcatttct |
14199218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 313
Target Start/End: Complemental strand, 34409014 - 34408878
Alignment:
| Q |
177 |
taccatcccatatgggacattgcatatggaagactgagaacaccagcaccaaccatggctgttagattgtggaacgctgaataccaccatttggcatttc |
276 |
Q |
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| T |
34409014 |
taccatcccatcttagacatggcgtaaggaagggtgagaacgccggcgccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcc |
34408915 |
T |
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| Q |
277 |
tagaagcagttacaggaagccaatcatcaatggcctt |
313 |
Q |
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| T |
34408914 |
tcgaggcagtgacgggaagccaatcatcgatggcctt |
34408878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 7980033 - 7980094
Alignment:
| Q |
213 |
agaacaccagcaccaaccatggctgttagattgtggaacgctgaataccaccatttggcatt |
274 |
Q |
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| T |
7980033 |
agaacaccagctccaaccatggcagtgacattgtgaaaagctgagtaccaccattttgcatt |
7980094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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