View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21520_low_5 (Length: 286)
Name: NF21520_low_5
Description: NF21520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21520_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 36202356 - 36202107
Alignment:
| Q |
15 |
agcagagatgatgaaaatctgaagtcgaaacatgaacatagtttggactttggaaaacatcaccttggagagattagagattgacaagggcttggtacgg |
114 |
Q |
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| T |
36202356 |
agcagagatgatgaaaatctgaagtcgaaacatgaacatagtttggactttggaaaacatcaccttggagagattagagattgacaagggcttggtacgg |
36202257 |
T |
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| Q |
115 |
tatagatgaattaagactttgttttttctatcagttgcttgtgcttgtaattctaagatatgactgattcagataataataataataactgtcataatgt |
214 |
Q |
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| T |
36202256 |
tatagatgaattaagactttgttttttctattagttgcctgtgcttgtaattctaagatatgactgattcagataataataataataactgtcataatgt |
36202157 |
T |
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| Q |
215 |
gatgtgtggtaattgttctgtctaattttatcttgtttttaccatatggg |
264 |
Q |
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| T |
36202156 |
gatgtgtggtaattgttctgtctaattttatcttgtttttaccatatggg |
36202107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 36198939 - 36198800
Alignment:
| Q |
62 |
ctttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatgaattaagactttgttttttctatcagttgcttgtgcttg |
161 |
Q |
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| T |
36198939 |
ctttggaaaacacaatgttggagagattagagattggtaagtgcttttta-ggtatagatgaatttacactttgcttttttggtcagttgcttgtgcttg |
36198841 |
T |
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| Q |
162 |
taattctaagatatgactgattcagataataataataataa |
202 |
Q |
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| T |
36198840 |
taattttaagatatgaccagttcagagaataataataataa |
36198800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 196
Target Start/End: Complemental strand, 36214793 - 36214661
Alignment:
| Q |
63 |
tttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatgaattaagactttgttttttctatcagttgcttgtgcttgt |
162 |
Q |
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| T |
36214793 |
tttggaaaacacaatgttggggagattagagattgacaagtgctttgt-tggtatagatcaattaagactttgcttattcggtcagttgcatgtgcttgt |
36214695 |
T |
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| Q |
163 |
aattctaagatatgactgattcagataataataa |
196 |
Q |
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| T |
36214694 |
aattttaagatatgaccagtttagataataataa |
36214661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 36209923 - 36209877
Alignment:
| Q |
15 |
agcagagatgatgaaaatctgaagtcgaaacatgaacatagtttgga |
61 |
Q |
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| T |
36209923 |
agcagagatgatgaaaatctgaagtcgaaacatgcacatcgtttgga |
36209877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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