View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21520_low_6 (Length: 238)
Name: NF21520_low_6
Description: NF21520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21520_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 20010793 - 20010997
Alignment:
| Q |
18 |
agtacctggttcttaggcattggcatttatatttactgataaagtttgttagagaacattggaatgttaagagaaaaatattgacattgatatcctgtta |
117 |
Q |
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||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20010793 |
agtacctggtttttaggcattgacatttatacttactgataaagtttgttagagaacattggaatgttaagagaaaaatattgacactgatatcctgtta |
20010892 |
T |
|
| Q |
118 |
tcataaatttagaaaatcaaatagcgaagcttgtttagattaatgtctcattagctttttcatcttcatatttcaataaacaataacaatagatcctaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20010893 |
tcataaatttagaaaatcaaatagcgaagcttgtttagattaatgtctcgttaactttttcatcttcatatttcaataaacaataacaatagatcctaat |
20010992 |
T |
|
| Q |
218 |
atatt |
222 |
Q |
| |
|
||||| |
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|
| T |
20010993 |
atatt |
20010997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 19007451 - 19007657
Alignment:
| Q |
18 |
agtacctggttcttaggcattggcatttatatttactgataaagtttgttagagaacattggaatgttaagagaaaaatattgacattgatatcctgtta |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19007451 |
agtacctggttcttaggcattgacatttatatttactgataaagtttgttagagaacattggaatgttaagagaaaaatattgacattgaaatcctgtta |
19007550 |
T |
|
| Q |
118 |
tcataaatttagaaaatcaaatagcgaagcttgtttagattaatgtctcattagctttttcatcttcatattt--caataaacaataacaatagatccta |
215 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19007551 |
tcacaaatttagaaaatcaaatagcgaagcttgtttagattaatgtctcattaactttttcatcttcatatttcacaataaacaataacaatagatccta |
19007650 |
T |
|
| Q |
216 |
atatatt |
222 |
Q |
| |
|
||||||| |
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|
| T |
19007651 |
atatatt |
19007657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 22620906 - 22621110
Alignment:
| Q |
18 |
agtacctggttcttaggcattggcatttatatttactgataaagtttgttagagaacattggaatgttaagagaaaaatattgacattgatatcctgtta |
117 |
Q |
| |
|
||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22620906 |
agtacctggtttttaggcattgacatttatacttactgataaagtttgttagagaacattggaatgttaagagaaaaatattgacactgatatcctgtta |
22621005 |
T |
|
| Q |
118 |
tcataaatttagaaaatcaaatagcgaagcttgtttagattaatgtctcattagctttttcatcttcatatttcaataaacaataacaatagatcctaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
22621006 |
tcataaatttagaaaatcaaatagcgaagcttgtttagattaatgtctcgttaactttttcatcttcatatttcaataaacaataacaatagagcctaat |
22621105 |
T |
|
| Q |
218 |
atatt |
222 |
Q |
| |
|
||||| |
|
|
| T |
22621106 |
atatt |
22621110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 25556013 - 25555832
Alignment:
| Q |
41 |
catttatatttactgataaagtttgttagagaacattggaatgttaagagaaaaatattgacattgatatcctgttatcataaatttagaaaatcaaata |
140 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25556013 |
catttatacttactgataaagtttgttagagaacattggaatgttaagagaaaaatattgacattgatatcctgttatcataaatttagaaaatcaaata |
25555914 |
T |
|
| Q |
141 |
gcgaagcttgtttagattaatgtctcattagctttttcatcttcatatttcaataaacaataacaatagatcctaatatatt |
222 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25555913 |
gcgaagcttgtttagattaatgtctcgttaactttttcctcttcatatttcaataaacaataacaatagatcctaatatatt |
25555832 |
T |
|
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