View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21521_high_1 (Length: 836)

Name: NF21521_high_1
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21521_high_1
NF21521_high_1
[»] chr4 (15 HSPs)
chr4 (374-819)||(4027728-4028173)
chr4 (1-378)||(4027397-4027774)
chr4 (380-543)||(4013514-4013674)
chr4 (392-645)||(3950879-3951129)
chr4 (380-514)||(3991207-3991341)
chr4 (129-375)||(3951224-3951476)
chr4 (391-548)||(4005279-4005436)
chr4 (129-188)||(4013305-4013364)
chr4 (567-701)||(4215913-4216055)
chr4 (589-701)||(3796811-3796931)
chr4 (294-378)||(4013098-4013184)
chr4 (593-653)||(3961099-3961159)
chr4 (145-236)||(3990563-3990654)
chr4 (593-638)||(4221238-4221283)
chr4 (591-638)||(3822703-3822750)
[»] chr5 (1 HSPs)
chr5 (392-524)||(13400464-13400594)


Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 374 - 819
Target Start/End: Original strand, 4027728 - 4028173
Alignment:
Q  374 gaatttaataagcagacattacagcataaattatttgagaagctctggaaaacaaatacgccattgaattggaacaaatgcactctgaacgatctttctt 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4027728 gaatttaataagcagacattacagcataaattatttgagaagctctggaaaacaaatacgccattgaattggaacaaatgcactctgaacgatctttctt 4027827  T
Q  474 cgtctctaggacctcgaaaattacaataagggaaacacaagaatattaccggaacgaaagagaaaagaaatgaaatgaaaagatcacagaaagcaaaatt 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4027828 cgtctctaggacctcgaaaattacaataagggaaacacaagaatattaccggaacgaaagagaaaagaaatgaaatgaaaagatcacagaaagcaaaatt 4027927  T
Q  574 aatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatgaatgtcattgaccttgcag 673  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4027928 aatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatgaatgtcattgaccttgcag 4028027  T
Q  674 tttaaagtgtgaactaatacacattcacactcccacagagcattagatctgtatattattnnnnnnntattaatgtcaccattatttaaatataaaatag 773  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  4028028 tttaaagtgtgaactaatacacattcacactcccacagagcattagatctgtatattattaaaaaaatattaatgtcaccattatttaaatataaaatag 4028127  T
Q  774 caggggcaaacgttgagttgcttaacaatttacatgctggaattat 819  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4028128 caggggcaaacgttgagttgcttaacaatttacatgctggaattat 4028173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 4027774 - 4027397
Alignment:
Q  1 cagagcatctcaaataatttattctgtaatgtatgcttattaaattctaatttgtgttacgaattgatcctgaaactttaagatttttcaatgaaacagt 100  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4027774 cagagcttctcaaataatttatgctgtaatgtctgcttattaaattcgaatttgtgttacgaattgatcctgaaactttaagatttttcaatgaaacagt 4027675  T
Q  101 atgtaatcatggttttttacttcttagctctatatttgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4027674 atgtaatcatggttttttacttcttagctctatatttgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctat 4027575  T
Q  201 gtcctgcacacttatgtagaaatcattgtataatagaactaaatgttaatttgcagatattagagcaaactatcattttggtccttaatgtcaagaattg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4027574 gtcctgcacacttatgtagaaatcattgtataatagaactaaatattaatttgcagatattagagcaaactatcattttggtccttaatgtcaagaattg 4027475  T
Q  301 ggacttgaaaaatttctcatgtgtaggtcagagggactatgactaataagcttttatgagttttaacaacttagaatt 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4027474 ggacttgaaaaatttctcatgtgtaggtcagagggactatgactaataagcttttatgagttttaacaacttagaatt 4027397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 380 - 543
Target Start/End: Original strand, 4013514 - 4013674
Alignment:
Q  380 aataagcagacattacagcataaattatttgagaagctctggaaaacaaatacgccattgaattggaacaaatgcactctgaacgatctttcttcgtctc 479  Q
    |||||||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||| | ||| | |||| |||||||||||||||    
T  4013514 aataagcagagattacagcatatattatttgagaagctccggaagacaaatacgccattgaattggaacaatttcacacggaacaatctttcttcgtctc 4013613  T
Q  480 taggacctcgaaaattacaataagggaaacacaagaatattaccggaacgaaagagaaaagaaa 543  Q
    ||| |||| ||| || |||||||||||||||||||| || |||||||  |||||||||||||||    
T  4013614 tagaaccttgaacatcacaataagggaaacacaagatta-taccgga--gaaagagaaaagaaa 4013674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 392 - 645
Target Start/End: Complemental strand, 3951129 - 3950879
Alignment:
Q  392 ttacagcataaattatttgagaagctctggaaaacaaatacgccattgaattggaacaaatgcactctgaacgatctttcttcgtctctaggacctcgaa 491  Q
    |||||||||| ||| ||||||| ||||  |||  |||||| ||||||| |||||||||| ||||||  |||| ||||||||  |||||||| |||| |||    
T  3951129 ttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaacaatctttct--gtctctagaaccttgaa 3951032  T
Q  492 aattacaataagggaaacacaagaatattaccggaacgaaagagaaaagaaatgaaatgaaaagatcacagaaagcaaaattaatggccatagcctgaag 591  Q
      | |||||||||||||||||||  ||||| |||||||||| |||||| |||||||| ||||| |||||| |||   ||||||| || ||||||   |||    
T  3951031 cgtcacaataagggaaacacaaggttattaacggaacgaaacagaaaa-aaatgaaaagaaaatatcacaaaaaattaaattaacggtcatagcaataag 3950933  T
Q  592 aaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttc 645  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||    
T  3950932 aaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttc 3950879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 380 - 514
Target Start/End: Original strand, 3991207 - 3991341
Alignment:
Q  380 aataagcagacattacagcataaattatttgagaagctctggaaaacaaatacgccattgaattggaacaaatgcactctgaacgatctttcttcgtctc 479  Q
    |||||||||| ||||||||||| ||||||   ||||||| |||| |||||| ||||||||||||||||||| | |||||||||| ||||||||||||||     
T  3991207 aataagcagagattacagcatatattattgatgaagctccggaagacaaatgcgccattgaattggaacaacttcactctgaacaatctttcttcgtctg 3991306  T
Q  480 taggacctcgaaaattacaataagggaaacacaag 514  Q
    ||| |||| ||| ||  ||||||||||||||||||    
T  3991307 tagaaccttgaatatatcaataagggaaacacaag 3991341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 129 - 375
Target Start/End: Original strand, 3951224 - 3951476
Alignment:
Q  129 tctatatttgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgaccttcct---tatattctatgtcctgcacactt--atgtagaaat 223  Q
    ||||||||||||||||||||  ||||| | ||||||||| ||||| |||||||||||||| |   |||||   |||||||||||||||  ||| |||||     
T  3951224 tctatatttgtagatattgttagagctttaaagtaagacaaaaacttttttgtgaccttcttccatatatataatgtcctgcacacttttatgcagaaac 3951323  T
Q  224 cattgtataatagaactaaatgttaatt-tgcagatattagagcaaactatcattttggtccttaatgtcaagaattgggacttgaaaaatt--tctcat 320  Q
    | ||||||||||  ||||||  || | | |||||| ||||||| |||||  ||||||| ||||||| |||||||||||||||||||||| ||  || ||     
T  3951324 cgttgtataataatactaaaaatttactctgcagaaattagagtaaact--cattttgttccttaaagtcaagaattgggacttgaaaacttcgtcacac 3951421  T
Q  321 gtgtaggtcagagggactatgactaataagcttttatgagttttaacaacttaga 375  Q
    |||||| || |||||| | | || | ||| |||||||||||||||||||||||||    
T  3951422 gtgtagctcggagggattttaaccagtaaacttttatgagttttaacaacttaga 3951476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 391 - 548
Target Start/End: Original strand, 4005279 - 4005436
Alignment:
Q  391 attacagcataaattatttgagaagctctggaaaacaaatacgccattgaattggaacaaatgcactctgaacgatctttcttcgtctctaggacctcga 490  Q
    ||||||||||| |||| |||||||| ||  ||| | ||||| ||||||||| |||||||| |||||||||||| |||||||||||||||||| |||| ||    
T  4005279 attacagcatatattagttgagaagttccagaagataaatatgccattgaactggaacaagtgcactctgaacaatctttcttcgtctctagaaccttga 4005378  T
Q  491 aaattacaataagggaaacacaagaatattaccggaacgaaagagaaaagaaatgaaa 548  Q
    | |   ||||||||||||||||||  ||||| | ||| ||||  ||||||||||||||    
T  4005379 ataacgcaataagggaaacacaaggttattatcagaaagaaatcgaaaagaaatgaaa 4005436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 4013364 - 4013305
Alignment:
Q  129 tctatatttgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgaccttc 188  Q
    |||||||||||||||||||||||||||||  |||||||||||||| ||||||| ||||||    
T  4013364 tctatatttgtagatattgtatgagctgtagagtaagaccaaaacatttttgttaccttc 4013305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 567 - 701
Target Start/End: Original strand, 4215913 - 4216055
Alignment:
Q  567 caaaattaatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatg--------aatg 658  Q
    ||||| ||||||  ||||||  |||||||| || || || ||| ||||||||||| |||||||||||||||| ||||||  |||||||        ||||    
T  4215913 caaaagtaatggtgatagccataagaaagctataacggaacttcaatgctttggccgctagagatctgattcaactttctatcatatggaagaagcaatg 4216012  T
Q  659 tcattgaccttgcagtttaaagtgtgaactaatacacattcac 701  Q
    |||||||||||||| || ||||||||||||  |||||||||||    
T  4216013 tcattgaccttgcatttaaaagtgtgaactcgtacacattcac 4216055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 589 - 701
Target Start/End: Original strand, 3796811 - 3796931
Alignment:
Q  589 aagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatg--------aatgtcattgaccttgcagtttaaag 680  Q
    |||||||| || || || ||| ||||||||||| ||||| |||||||||| ||||||  |||||||        |||||||||||||||||| || ||||    
T  3796811 aagaaagctataacggaacttcaatgctttggccgctagtgatctgattcaactttctatcatatggaagaagcaatgtcattgaccttgcatttaaaag 3796910  T
Q  681 tgtgaactaatacacattcac 701  Q
    |||||||| ||||||||||||    
T  3796911 tgtgaactcatacacattcac 3796931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 4013184 - 4013098
Alignment:
Q  294 agaattgggacttgaaaaatttctca--tgtgtaggtcagagggactatgactaataagcttttatgagttttaacaacttagaatt 378  Q
    ||||||||||||||||||| | ||||  ||||||| |  ||| || |||||||||||||||||||||||||||||  ||||||||||    
T  4013184 agaattgggacttgaaaaaatgctcacatgtgtagctttgagagattatgactaataagcttttatgagttttaatgacttagaatt 4013098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 653
Target Start/End: Complemental strand, 3961159 - 3961099
Alignment:
Q  593 aagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatat 653  Q
    ||||||||||| ||||| |||| ||||||||||||||||||| ||| |||||| |||||||    
T  3961159 aagcaattactaaccttcaatgatttggctgctagagatctgtttcaactttctctcatat 3961099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 3990654 - 3990563
Alignment:
Q  145 ttgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctatgtcctgcacac--ttatgta-gaaatcattgtataatag 236  Q
    ||||||||||| ||||| ||||||||||| ||||||||| ||   ||||||||| |||| |||||||  ||||| | ||||||||||||||||||    
T  3990654 ttgtatgagctttgaagaaagaccaaaacttttttgtgaact---ttatattctctgtcttgcacacttttatgcaggaaatcattgtataatag 3990563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 638
Target Start/End: Original strand, 4221238 - 4221283
Alignment:
Q  593 aagcaattactgaccttgaatgctttggctgctagagatctgattc 638  Q
    ||||||||||||||||| |||||||||  |||||||||||||||||    
T  4221238 aagcaattactgaccttaaatgctttgtttgctagagatctgattc 4221283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 638
Target Start/End: Original strand, 3822703 - 3822750
Alignment:
Q  591 gaaagcaattactgaccttgaatgctttggctgctagagatctgattc 638  Q
    ||||| ||||||||||||| |||||||||  |||||||||||||||||    
T  3822703 gaaagaaattactgaccttaaatgctttgtttgctagagatctgattc 3822750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 524
Target Start/End: Original strand, 13400464 - 13400594
Alignment:
Q  392 ttacagcataaattatttgagaagctctggaaaacaaatacgccattgaattggaacaaatgcactctgaacgatctttcttcgtctctaggacctcgaa 491  Q
    |||||||||| ||| || |||| ||||  ||| | ||||| ||||||| ||||||||||  || || ||||| ||||||||| ||||| || |||| |||    
T  13400464 ttacagcatatattgttggagaggctccagaagaaaaatatgccattggattggaacaa--gcgctatgaacaatctttctttgtctcaagaaccttgaa 13400561  T
Q  492 aattacaataagggaaacacaagaatattaccg 524  Q
     ||  ||||||||||||||||||  ||||||||    
T  13400562 catcgcaataagggaaacacaaggttattaccg 13400594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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