View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21521_high_10 (Length: 402)
Name: NF21521_high_10
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 34 - 386
Target Start/End: Original strand, 51043758 - 51044111
Alignment:
| Q |
34 |
gaagggaagggaatagggaagaagaaattataaaataataattgcagagaaaaggagaagaaccaaagtaaataaactctaatctaacatctcctttgtt |
133 |
Q |
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| T |
51043758 |
gaagggaagggaatagggaagaagaaattataaaataataattgcagagaaaaggagaagaaccaaagtaaataaactctaatctaacatctcctttgtt |
51043857 |
T |
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| Q |
134 |
gtctagctgatgtaacaaaatnnnnnnn-cagctctctcttcatgtgaaactttgacaatcatatgattaaattggtttgtttcctaatcaagagtcact |
232 |
Q |
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| T |
51043858 |
gtctagttgatgtaacaaaataaaaaaaacagctctctcttcatgtgaaactttgacaatcatatgattaaattggtttgtttcctaatcaagagtcact |
51043957 |
T |
|
| Q |
233 |
ctcaagaggtggctgcttttgaagcttaacaagtactttcaaacacactcaaattctatgtttcttccttcatgcatcacttcaaattcagtaacaatta |
332 |
Q |
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| T |
51043958 |
ctcaagaggtggctgcttttgaagcttaacaagtactttcaaacacactcaaattctatgtttcttccttcatgcatcacttcaaattcagtaacaatta |
51044057 |
T |
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| Q |
333 |
tttgaaactttttacatcacatatttgtgattgttagaagtttataagcttcat |
386 |
Q |
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| T |
51044058 |
tttgaaactttttacatcacatatttgtgattgttagaagtttataagcttcat |
51044111 |
T |
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